Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F06
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   3.6  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    27   3.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   6.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.2  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   8.2  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   8.2  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 662 YIGINDIITFTKLLKFASLSDNFLCAWLKL 573
           Y+G  ++ +FTK   F S +++F   W K+
Sbjct: 579 YLGAGEVTSFTKSSTFTSATNSFDLIWKKV 608


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 467 STHSPHIYFTTSYSQYAECS*TRNGS 544
           ++HSP+I  T SY+ ++  + TRN S
Sbjct: 86  TSHSPYISPTMSYTNHSPANLTRNSS 111


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 291 NNSAAKVGEIFTEAGAAFNKLAEMIMLLHPIAETTPSVQAKTPVKRKATDEKYAPSTSGQ 470
           N +A KV     +A   FN L  +   + P   T   +Q  TP++RK        STSG+
Sbjct: 142 NTTAVKVVSWILQALLLFNLLESVWQFVRP-QPTFDDLQL-TPLQRKLMGLPEGGSTSGK 199

Query: 471 H 473
           H
Sbjct: 200 H 200


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/68 (19%), Positives = 27/68 (39%)
 Frame = +3

Query: 378 PIAETTPSVQAKTPVKRKATDEKYAPSTSGQHTVHTSISQQVTLNMLNAPEPEMEVESLG 557
           P++    +  +  P+         AP+++ QH   +S    V  N +N P   + + S  
Sbjct: 237 PVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQPVSVPSNTINIPTDSLSIVSNP 296

Query: 558 GDVKLEFE 581
                +F+
Sbjct: 297 SQTPAKFD 304


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = +1

Query: 427 ERLQMKNMHQAHRVNTQSTHLFHNKLLSIC*MLLNQKWKLKAWVVMSS*SLSQAQRKLSL 606
           +RL++  + Q    N  S  +  N +LS+C  L+N+      +   SS  +SQ      +
Sbjct: 401 KRLELLELVQYALSNVDSDEIPSNVMLSVCTNLINEVASQNKY---SSTEISQITTNREV 457

Query: 607 KEANLSNLVKVMMSLI 654
           +E N   ++ V++++I
Sbjct: 458 EEEN-EEILLVLLNII 472


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +3

Query: 141  SIVHDYIYKTGTLIYLPHDLYLVNTIEQY 227
            +++ D+++K  + +Y P + + V  I++Y
Sbjct: 1170 ALMRDFVWKYSSRMYYPEEYHYVQEIQKY 1198


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 459 TSGQHTVHTSISQQVTLNMLNAPEPEMEVESLGGDVKLEFEPSTE 593
           +S    + T IS+  T+N  +AP+ +    +   + K+  E S +
Sbjct: 82  SSDNAAIDTDISEDETINQRHAPQTDYRYPNTSANPKMGLEESMD 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,983
Number of Sequences: 5004
Number of extensions: 55722
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)