Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F06
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)                   29   2.9  
SB_8198| Best HMM Match : DUF1430 (HMM E-Value=3.3)                    29   3.8  
SB_49634| Best HMM Match : RTC_insert (HMM E-Value=3.5)                28   8.8  

>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 949

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 429 KATDEKYAPSTSGQHTVHTSISQQVTLNMLNAPEPEMEVESLGG 560
           K TD    P+T+GQ +   + + QV +N    P P M+ + +GG
Sbjct: 656 KPTDSSDKPTTNGQVS---NAAPQVKVNAQPTPSPAMQADLIGG 696


>SB_8198| Best HMM Match : DUF1430 (HMM E-Value=3.3)
          Length = 211

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 173 SCFIYIIMYYRPFYIGVKDINTLIPPLTINYSRYVGTNFDFTNTNI 36
           S F+  I Y  P+ +   + NT+ PP  I+  R + T++ + ++NI
Sbjct: 70  SDFLIAIEYLAPYKLAKVERNTIFPP-RIHTHRLIQTSYRYISSNI 114


>SB_49634| Best HMM Match : RTC_insert (HMM E-Value=3.5)
          Length = 564

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/60 (26%), Positives = 22/60 (36%)
 Frame = +3

Query: 291 NNSAAKVGEIFTEAGAAFNKLAEMIMLLHPIAETTPSVQAKTPVKRKATDEKYAPSTSGQ 470
           N     VG   T   AAFN     +   H +     + +   P      +  YAP+ SGQ
Sbjct: 352 NTKVGPVGTYHTVPWAAFNTKVGPVGTYHTVPWAAFNTKGDEPADPSPLESLYAPAFSGQ 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,578,808
Number of Sequences: 59808
Number of extensions: 391605
Number of successful extensions: 886
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)