Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F05
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 52 1e-07
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 38 0.003
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 29 0.67
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 29 1.2
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 1.2
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 1.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 2.0
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 2.0
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 2.7
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 2.7
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 26 6.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 6.2
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 52.0 bits (119), Expect = 1e-07
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +2
Query: 620 ARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEK 799
A+ R + N P+ M+A+ FF RE+ K PD + F +RW ++ E+
Sbjct: 5 AKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDAT--FGQLGSLLGKRWKELTSTER 62
Query: 800 QRFHEMAEQDKHRFDLEMQNY 862
+ + E A QDK R++ E + Y
Sbjct: 63 EPYEEKARQDKERYERERKEY 83
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/82 (24%), Positives = 41/82 (50%)
Frame = +2
Query: 632 RSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 811
++R +P+ +AY F + R E K+ + S +K E+W ++SE +++ +
Sbjct: 110 KARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYE 169
Query: 812 EMAEQDKHRFDLEMQNYVPPKD 877
E A + + ++ EM Y K+
Sbjct: 170 EEASKLREAYEEEMAAYNASKE 191
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -3
Query: 768 SAHFFENAANITLTSGY---FFLCSSRHVCTKNA*AVMRPRGL 649
S H F I T GY +F C+S H CT + A++ GL
Sbjct: 236 SIHRFRAHKTILATGGYGRAYFSCTSAHTCTGDGNAMVSRAGL 278
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 746 AFSKKCAERWNTMSEKEKQRFHE--MAEQDKHR 838
A K + WN ++E+EK+ +HE +A ++K R
Sbjct: 224 ALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAR 256
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 100 SKQSTSERYSTESS-VDPTTTAAGAKSNYSTATKSITTAVAATTESP-ASFATAEPIF 267
S +S++ Y+T S+ +P+T + S T + T ++TE+P +S T+ PI+
Sbjct: 1438 SGESSAFTYTTSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIY 1495
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 67 VVAESVKSXKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 234
VV E S +R K ST++ +ST +PTTTA + S S T + + + S
Sbjct: 132 VVYEYHPSSERHK-STNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTS 186
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 73 AESVKSXKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 243
+ S + S STS ST SS T+++ + S+ STA+ S +++ ++ S +S
Sbjct: 224 SSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +1
Query: 109 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 243
STS Y + SSV ++++ + S+ + + S++T+ +T S +S
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 469 NTAATTNSTRTHSSCSATTDTGSI 540
++AAT+ STR SS A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 469 NTAATTNSTRTHSSCSATTDTGSI 540
++AAT+ STR SS A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 462 LNQYSSNNKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLY 599
L +YS + + +TF SN + + YR N P+ +S S S LY
Sbjct: 100 LIEYSGSAFMPMSTFTPQSNRKPTEAYRRNSPVKKSFSRPSHSLLY 145
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 85 KSXKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITT 210
K SK+ TSER +SSV P+ + S+ S K + T
Sbjct: 91 KLISASKEITSERKRAKSSVSPSYLTDSSPSDLSVENKVLLT 132
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 683 FVQTCREEHKKKYPDVSVIFAAFSKKCAERW 775
FV TC+ H+K+Y + + AFS RW
Sbjct: 169 FVLTCKNLHRKRYSS-DMEYIAFSCSKDRRW 198
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 19 VTISAEIVCSFVLXI---LVVAESVKSXKRSKQSTSERYSTESSVDPTTTAAGAKSNYST 189
VT+S+ + SF L S + + S+S YS SSV PT+ + S++++
Sbjct: 257 VTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSN-SSVIPTSVPSSV-SSFTS 314
Query: 190 ATKSITTAVAATTES 234
++ S TT + A+ S
Sbjct: 315 SSSSYTTTLTASNTS 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,768
Number of Sequences: 5004
Number of extensions: 37828
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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