Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F03
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             49   2e-06
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     27   8.6  
SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +2

Query: 272 CGVISPRFDVPINDIERW-TNLLPSRQF 352
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +1

Query: 58  MVRMNVLSDALKSIHNAEKRGKRQVLIRP 144
           MVR+NVL+DAL SI NAEKRGKRQV IRP
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRP 29



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 155 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN-LTGRLNKCGVISPR 292
           VIVKFLTVMMKH        V   R G++V    +G L+  GV+  R
Sbjct: 33  VIVKFLTVMMKH--------VAQPRIGEMVTRPCSGALSAAGVVVTR 71


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 281 ISPRFDVPINDIERWTNLLPSRQFGYL 361
           ISP F VP  D ++ ++L+PS+Q  +L
Sbjct: 381 ISPIFTVPKKDGKKKSSLIPSQQITFL 407


>SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 115 RGKRQVLIRPXFQSHR*VFNSDDEARLH 198
           RG R ++  P  Q HR V++ DD A ++
Sbjct: 527 RGDRAMIYLPLNQEHRPVYHRDDRAMIY 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,922,287
Number of Sequences: 59808
Number of extensions: 231217
Number of successful extensions: 1113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)