Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E22
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    47   2e-05
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    29   3.4  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    29   3.4  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    28   7.9  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    28   7.9  
U23526-5|AAB36850.1|  391|Caenorhabditis elegans Acyltransferase...    28   7.9  

>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
 Frame = +3

Query: 147 PNKKRTLXAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMV-DTFQKQYEALKIP 323
           P     L   K  S  +   V   P + PKI++A  K+A+P    V D+ QKQYE++KIP
Sbjct: 24  PEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALPAHSAVLDSLQKQYESVKIP 83

Query: 324 YPADTQTALVE-SQWNQVKNAIDAFIQESNANIASYQKEINATKALLP----YDQMTMED 488
           Y       L E  QW    NA     +   A+     K++    A  P    +D+    +
Sbjct: 84  YGEVPAEYLKEVDQWVDYNNARIKLHEVKVADGLQEAKKVEEKWAKAPPVEHFDRQHFVE 143

Query: 489 FYDAH 503
           ++ AH
Sbjct: 144 YFPAH 148


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 414 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 581
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 414 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 581
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/85 (20%), Positives = 39/85 (45%)
 Frame = +3

Query: 258 QAVPIPGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKE 437
           Q +  PG+   F+       +P     Q  +V    NQ+K  I+A +  S++  +   + 
Sbjct: 375 QIIDRPGIRSLFKFVLPEYHMPSGDVFQATIVPQLLNQMKQQIEALVHNSSSLSSIPDQV 434

Query: 438 INATKALLPYDQMTMEDFYDAHPDL 512
           + ++ A   Y+ +++ +   A P++
Sbjct: 435 MTSSSATSSYEDVSVNESQMAGPNV 459


>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 144 PPNKKRTLXAFKIKSDNYLRRVLANPPEPPKINWAV 251
           PP K+ T   +   S N+ R +   PP PP  N+ +
Sbjct: 179 PPAKRTTPIHWTSSSQNHYRTMAPAPPPPPGKNYQI 214


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 144 PPNKKRTLXAFKIKSDNYLRRVLANPPEPPKINWAV 251
           PP K+ T   +   S N+ R +   PP PP  N+ +
Sbjct: 479 PPAKRTTPIHWTSSSQNHYRTMAPAPPPPPGKNYQI 514


>U23526-5|AAB36850.1|  391|Caenorhabditis elegans
           Acyltransferase-like protein 12 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 345 ALVESQWNQVKNAIDAFIQESNANIASYQKE 437
           A+V + WN V   + A + E   N+A Y +E
Sbjct: 86  AMVNAHWNAVSVFVGATVTEYGTNLAGYAEE 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,055,131
Number of Sequences: 27780
Number of extensions: 377802
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)