Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E22
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.42 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 144 GTRLSESSPVYGTL*DXLRHFSAFFRLKLRMHXN 43
           G+R SE +P  G   +  +H   +FR  LR+H N
Sbjct: 3   GSRSSEINPKEGLYDEGGKHTVHWFRKGLRLHDN 36


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +3

Query: 327 PADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHP 506
           PA+    +      +  + +D F++E  A++A   +  + T ++ P  +    +   A+P
Sbjct: 54  PAEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANP 113

Query: 507 DLA 515
            LA
Sbjct: 114 LLA 116


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +3

Query: 327 PADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEI 440
           P    T LVE   N+++NA+   + +++       +E+
Sbjct: 351 PGLRNTELVERMHNKLRNALQTVLAQNHPQHPDILREL 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,861
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)