Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E20
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.7  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    26   4.9  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   6.4  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   8.5  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    25   8.5  

>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 635 EFWKIVKNSGV*PVAFNFDISSIFGSSGRVGKLILFPTCVVL 510
           +FWK +KN+       NF   SIF ++G  G L  FP+   L
Sbjct: 66  DFWKAIKNAKN-ASDINFSDYSIFFAAGGHGTLFDFPSATNL 106


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = -3

Query: 715 ATLVNNNNTQFQYLKSKMHFIAQLQRLSFGKLSKTPVYSRLHSILI*AAYSEALG-ASES 539
           A L ++   Q   L++   +IAQ    +FGKL+K       +S+++ A+ S+  G  +++
Sbjct: 274 AVLADSIKKQEHGLEAVSLYIAQQYITNFGKLAKAS-----NSMIVPASTSDVSGMVAQA 328

Query: 538 LSCFRLVS 515
           LS F+ VS
Sbjct: 329 LSIFKQVS 336


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 609 GVFDNFPKLNLWSCAIKCIFDFKYWNCVL 695
           G    F K+  +     C+F F YW C L
Sbjct: 110 GQMSQFQKVMSYFPPTACLFSFDYWGCGL 138


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 718 NATLVNNNNTQFQYLKSKMHFIAQLQRLSFGKLSKTPVYSRLHSILI 578
           N ++   NN++ QY+  K+  +A +  ++FGK   TP    L   ++
Sbjct: 40  NTSICKPNNSEEQYVILKLDKLALVTDITFGKF-HTPHLCNLKDFIV 85


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  VSKPRRXHVLAXKFEXSIKQSYXQNSKQ 97
           +SKPRR +V   K E +IK S     K+
Sbjct: 239 ISKPRRSYVQNNKSEQTIKPSKQNKQKE 266


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 585 IECNRLYTGVFDNFPKLNLWSCAI 656
           I CN   T VF  FPKL + + +I
Sbjct: 172 IACNEGITNVFAKFPKLRMVTASI 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,190
Number of Sequences: 5004
Number of extensions: 57948
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)