Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E16
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 90 1e-19
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 33 0.024
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 1.5
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 27 1.5
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 1.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 2.0
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 4.7
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 6.2
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 6.2
SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyce... 25 6.2
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 24 8.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 24 8.2
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 89.8 bits (213), Expect = 1e-19
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Frame = +2
Query: 68 EYEKAQQRSLNDPEGFWGEVGSEL-EWTKPWDRVLDDS-NAPFTKWWVGGEMSVCYNAVD 241
EY++ + S+NDP FWG + ++ W K + V+ S + + W+ G +S CYN VD
Sbjct: 34 EYKRMYEESINDPSTFWGNMARDMMTWDKQFSTVVQGSIDKADSAWFADGAISPCYNLVD 93
Query: 242 RHVVNGRGEQFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMP 415
RH + R + AL++++ + R I+Y EL VS+ AG L ++GV G RV IYMP
Sbjct: 94 RHAI-ARPDAVALIYEADEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMP 150
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 32.7 bits (71), Expect = 0.024
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 317 ISYNELKDQVSRLAGKLTTLGVSKGARVLIYMP 415
+S+N++ D+ R AG L LG++KG + +Y P
Sbjct: 97 LSFNDIYDKALRYAGALRKLGLNKGDKFELYAP 129
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 204 THHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGS 100
+HH V L S +R H +H+ S P S + S
Sbjct: 307 SHHNVRTTLFSDDSRFHSKIHTHSTPPSQMYSAAS 341
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 1.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 314 KISYNELKDQVSRLAGKLTTLGVSKGARV 400
K SYN LK Q S L GK++ + + G R+
Sbjct: 69 KNSYNSLKQQHSNLLGKVSGIKSTLGERL 97
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 216 ISPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFNDLCW 82
I+ P+HH VN S +H++S SPQ+ SF+ W
Sbjct: 8 INKPSHHNVN-----YNGNSFNSIHATSFGMSPQSWGNSFSGQAW 47
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 213 SPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFND 91
S P N + S+ T S HS P SP +PS ++ D
Sbjct: 280 SQPPRPPTNASTRSTGTSS-SMAHSYDSPPSPSSPSDAYGD 319
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 211 RDVGMLQRGGPTRGQWKRRAVRFGSRLA 294
R++G + G P Q K+RA++FGS+ A
Sbjct: 503 RELGR-RLGCPLASQEKKRAIQFGSKAA 529
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = -2
Query: 180 LLSSR---TRSHGFVHSSSDPTSPQ 115
LL+SR SHG VH S P S Q
Sbjct: 54 LLNSRYYSNHSHGLVHGSKSPPSSQ 78
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 6.2
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -2
Query: 147 VHSSSDPTSPQNPS 106
+HS+S+PT+P+ P+
Sbjct: 23 IHSTSNPTNPEEPN 36
>SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 24.6 bits (51), Expect = 6.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 44 YNVCGTTPEYEKA--QQRSLNDPEGFWGEVGSELEWTKPWDRVLDDSN 181
Y GT +E+A N P+ F E EW KP+D V++ +N
Sbjct: 79 YEPNGTKRPFEQAIPNYNWANPPQDF-----EEPEWLKPFDVVMEGTN 121
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.2 bits (50), Expect = 8.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +2
Query: 278 LVHDSPLTDTVRKISYNEL 334
L+H++P+T K++Y E+
Sbjct: 190 LIHETPITTETSKMNYQEI 208
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.2 bits (50), Expect = 8.2
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = -2
Query: 210 PPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFNDLCWAFSYSGVVP 55
PP HH S HG + PT+P NP + D ++ Y P
Sbjct: 567 PPIHH--GERHFDSGNDWHGNPSTVPPPTNPYNPGYPYMDPNYSSGYVSQPP 616
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,078
Number of Sequences: 5004
Number of extensions: 40110
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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