Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E16
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397... 99 1e-21
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 95 2e-20
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 30 0.65
05_07_0175 - 28164252-28164529,28165381-28166560 29 1.5
01_06_0271 - 28055367-28055402,28055503-28055622,28055710-280558... 29 1.5
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 28 2.6
03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380 28 2.6
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180... 28 3.5
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295... 27 4.6
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 27 4.6
02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587... 27 6.0
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 27 8.0
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 27 8.0
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434... 27 8.0
03_05_0505 + 24991699-24991921,24992100-24992665 27 8.0
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 27 8.0
>02_04_0049 +
19238794-19239003,19239359-19239505,19239595-19239750,
19239870-19239992,19240073-19240241,19240700-19240782,
19240917-19241018,19241104-19241192,19241317-19241407,
19241734-19241847,19242371-19242447,19242534-19242612,
19242710-19242778,19243022-19243197,19243309-19243365,
19243460-19243550,19243644-19243742,19243878-19244063
Length = 705
Score = 99.1 bits (236), Expect = 1e-21
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Frame = +2
Query: 68 EYEKAQQRSLNDPEGFWGEVGSELEWTKPWD------RVLDDSNAPFT-KWWVGGEMSVC 226
+Y+K +RS+NDP GFW E+ W + W+ LD + P W+ GG+ ++C
Sbjct: 70 KYQKMYERSINDPAGFWSEIADAFYWKEKWNPSEVCSENLDVTKGPVQISWFKGGKTNIC 129
Query: 227 YNAVDRHVVNGRGEQFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLI 406
YNAVDR+V G G++ A+ + K++Y+EL D+V +LA L ++GV KG V+I
Sbjct: 130 YNAVDRNVEAGNGDKIAMYWEGNEPGQDGKLTYSELLDRVCQLANYLKSVGVGKGDAVII 189
Query: 407 YMP 415
Y+P
Sbjct: 190 YLP 192
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 95.1 bits (226), Expect = 2e-20
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 7/123 (5%)
Frame = +2
Query: 68 EYEKAQQRSLNDPEGFWGEVGSELEWTKPW--DRV----LDDSNAPFT-KWWVGGEMSVC 226
+Y++ +RS++DP GFW E+ W W D V LD + P +W+ GG+ ++C
Sbjct: 220 QYQEMYRRSIDDPAGFWSEIAETFYWKHKWNPDEVCTENLDVTKGPIKIEWFKGGKTNIC 279
Query: 227 YNAVDRHVVNGRGEQFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLI 406
YNAVDR+V G GE+ A+ + K++Y+EL ++V +LA L ++GV KG V+I
Sbjct: 280 YNAVDRNVEAGDGEKIAMYWEGNEPGQDAKLTYSELLNKVCQLANYLKSVGVGKGDAVVI 339
Query: 407 YMP 415
Y+P
Sbjct: 340 YLP 342
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 392 PPYSLPTLSAFQPDARPDLLAHCKRF 315
P ++ L+A PDA PDLLA C+ F
Sbjct: 124 PTFASLLLAALLPDATPDLLAFCEGF 149
>05_07_0175 - 28164252-28164529,28165381-28166560
Length = 485
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 212 EMSVCYNAVDRHVVNGRGEQFALVHDSPLTDTVRK 316
E+S+C NA R++V RG+ ++ + P + R+
Sbjct: 248 ELSLCRNAAARYLVESRGQLLMVIRERPAYNQSRE 282
>01_06_0271 -
28055367-28055402,28055503-28055622,28055710-28055892,
28056006-28056145,28056347-28056595,28056706-28056823,
28056924-28056999,28057096-28057162,28057282-28057369,
28057506-28057616,28058127-28058221,28058305-28058344,
28058736-28058812,28058978-28059026,28059464-28059520,
28059624-28059713,28059833-28059896,28060076-28060245
Length = 609
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 317 ISYNELKDQVSRLAGKLTTLGVSKGARVLIY 409
I+Y E D V ++ + +LGV KG R IY
Sbjct: 85 ITYKEAYDTVIKVGASIRSLGVGKGGRCGIY 115
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 113 FWGEVGSELEWTKPWDRVLDDSNAPFTKWWVGGEMSVCYN 232
F+ + EL KP + L + F WW G +++ YN
Sbjct: 219 FYAAIKDELAHIKPLAKFLTFKSIVFLTWWQGVVIALLYN 258
>03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380
Length = 356
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 232 RGGPTRGQWKRR 267
RGGP RG WKRR
Sbjct: 104 RGGPMRGDWKRR 115
>05_01_0243 -
1806770-1806832,1806942-1807061,1807275-1807457,
1807554-1807693,1807768-1808010,1808664-1808781,
1808902-1808977,1809054-1809120,1809201-1809288,
1809381-1809491,1809632-1809799,1809946-1810040,
1810123-1810162,1810242-1810318,1810607-1810655,
1810756-1810812,1810959-1811048,1811160-1811223,
1812085-1812245
Length = 669
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 320 SYNELKDQVSRLAGKLTTLGVSKGARVLIY 409
SY E+ ++V ++ L LGV G+R+ IY
Sbjct: 83 SYREVYEEVLQVGSALQQLGVKPGSRIGIY 112
>06_01_0414 +
2948868-2948998,2949136-2949202,2949442-2949531,
2950509-2950565,2950684-2950732,2950934-2951010,
2952776-2952815,2952909-2953003,2953174-2953341,
2953634-2953721,2954275-2954341,2954571-2954646,
2954759-2954876,2954988-2955233,2955296-2955471,
2956056-2956238,2956331-2956450,2956586-2956621
Length = 627
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 317 ISYNELKDQVSRLAGKLTTLGVSKGARVLIY 409
++Y E+ D V +LA ++ G+SKG IY
Sbjct: 73 MTYKEVYDVVMKLAASISKSGISKGESCGIY 103
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -1
Query: 331 LIVRDFPDRVSEWRVVNQSELLASSIDHVSVHRVVTYRHLSADPPFRERRVTVI*NSIP 155
L+V D P R + E A S++ + VH YR DP RR+ ++ + P
Sbjct: 516 LLVADVPPRWDATWIRAVVEAAAPSLERLHVHFSQHYRQDDDDPAADRRRLEIVWENEP 574
>02_05_1120 +
34257504-34258294,34258483-34258571,34258616-34258713,
34259269-34259292,34259314-34259404,34259761-34259813,
34259933-34260151
Length = 454
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 147 VHSSSDPTSPQNP-SGSFNDL 88
V S+S PTSPQ P SG F+ L
Sbjct: 133 VRSTSSPTSPQGPNSGHFSSL 153
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 26.6 bits (56), Expect = 8.0
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -3
Query: 404 SAPGPPYSLPTLSAFQPDARPDLLAHCKRFS*PCQ*VASREPKRTARL 261
++P PPY P L F P LA +S P V SRE R A L
Sbjct: 320 ASPSPPYGTPLLQPFPPPNPSPSLASAPVYS-P---VLSREKVRDALL 363
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 192 VNGALLSSRTRSHGFVHSSSDPTSPQNPS 106
V G + S+ + VH S+ P P NPS
Sbjct: 91 VGGGIGSAPRSPYRMVHGSASPAQPNNPS 119
>03_06_0411 +
33741903-33742163,33742990-33743168,33743342-33743426,
33743506-33743822,33743983-33744106,33744810-33744902,
33745296-33745364,33745654-33745704,33745705-33745854,
33745904-33746125,33746413-33746568,33746716-33746823,
33746992-33747126,33747209-33747364,33747544-33747664,
33748182-33748267
Length = 770
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 287 DSPLTDTVRKISYNELKDQVSRLAGKLTTLGVS 385
D T + S ELKD++ +AGK+ G+S
Sbjct: 686 DPEATSDAPRPSSQELKDEILEVAGKIYKAGIS 718
>03_05_0505 + 24991699-24991921,24992100-24992665
Length = 262
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 128 GSELEWTKPWDRVLDDSNAPFTKWWVGGEM 217
G+ ++W LD S A +WW+G ++
Sbjct: 224 GAPVQWCPRAGGGLDGSGASLRQWWIGRQL 253
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 26.6 bits (56), Expect = 8.0
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 276 ANCSPLPLTTCRSTAL*HTDISP--PTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSG 103
AN P+ C AL + I+ P V+ A + S T+S S T P+NPSG
Sbjct: 378 ANFVPINAAPCTLQALNLSGIAQANPQKDKVSEASMGSGTKSQKIPVSQMVRTDPRNPSG 437
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,453,978
Number of Sequences: 37544
Number of extensions: 312167
Number of successful extensions: 926
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -