Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E15
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    28   0.84 
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   1.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.0  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   3.4  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 466  PVL*GDVPVQIPSYVKRNLVVRNSNNCVSHGRIDKEAAFLYSDKLDSPVNS 314
            P+L G  PV +PS     +    S N  S+GR D     L +   D P N+
Sbjct: 1048 PLLNGKSPVGVPSEAALRVSTDVSTNISSNGRADIPVDTLITSPADVPNNA 1098


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 274 SARIPNKYRDYCAHYLLDYQVCRYKE 351
           SA++ N Y +YC H  L   + RYKE
Sbjct: 74  SAQVINLYMEYCGHGDLANLIQRYKE 99


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 253  AKEEDLISARIPNKYRDYCAHYLLDYQVC-RYKEMPLLYRCAHEKHNYLNCEQQDY 417
            A+ + L   R P +  + CA Y +  +VC +Y +   ++   H   +Y+   Q+ +
Sbjct: 1304 AEFQGLWPLRTPEEKEEVCAVYNISQRVCTKYVQFGNVFNLLHAAVSYIRIHQKGF 1359


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 451 DVPVQIPSYVKRNLVVRNSNNCVSHGRIDKE 359
           DVPV  P Y+K  +   N++     G IDKE
Sbjct: 456 DVPVSSPDYLKDLVNALNTSKEQHKGAIDKE 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,226
Number of Sequences: 5004
Number of extensions: 37918
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)