Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E15
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73906-5|CAA98116.1| 123|Caenorhabditis elegans Hypothetical pr... 67 7e-12
AF106590-2|AAC78237.2| 301|Caenorhabditis elegans Hypothetical ... 32 0.25
AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical ... 29 3.1
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear recep... 28 4.1
AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormo... 28 4.1
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 28 5.4
AF016421-11|AAM45373.2| 417|Caenorhabditis elegans Hypothetical... 28 5.4
AF016685-2|AAG24148.1| 404|Caenorhabditis elegans Hypothetical ... 27 7.2
AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical ... 27 7.2
Z68218-3|CAA92473.1| 325|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 27 9.5
AF022978-2|AAG24183.1| 440|Caenorhabditis elegans Nuclear hormo... 27 9.5
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z73906-5|CAA98116.1| 123|Caenorhabditis elegans Hypothetical
protein D2030.4 protein.
Length = 123
Score = 67.3 bits (157), Expect = 7e-12
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 187 DDNPTFDPQAGFPYERKQREMIAKEEDLISARIPNKYRDYCAHYLLDYQVCRYKEMPLL- 363
D PTFDPQ GF RK REM A E++ ++ RDYCAH+L+ C+ + P
Sbjct: 22 DRPPTFDPQYGFERPRKVREMKATWEEMEQWKLKPAQRDYCAHHLISLMKCQTQNAPFAG 81
Query: 364 YRCAHEKHNYLNCEQQDYVLRMK 432
+ C E+ + CE D+++R+K
Sbjct: 82 HACDGERGAWDKCEYDDHIMRIK 104
>AF106590-2|AAC78237.2| 301|Caenorhabditis elegans Hypothetical
protein F08B6.3 protein.
Length = 301
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 88 QNSNLSGDNLIPYISTMGQIMGGYHARSVDLNSDDNPTFDPQAGFPYERKQREMIAKEE 264
++ L+GD L ++ G G Y A S+ NSDD+ D Q + K + AK E
Sbjct: 228 KDGKLAGDELTDWLLVDGTTAGSYEAESLLTNSDDDK--DGQLSYEEIVKHHALFAKTE 284
>AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical
protein T27B7.3 protein.
Length = 387
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 135 HGANYGRISCSLCGPEFRR*SYF*PSSWISIRKKTTRND 251
HG ++G I+C CG FRR S+ S WI KK + D
Sbjct: 16 HGTHFGVITCRACGVFFRR-SF--KSKWIF--KKCKKED 49
>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
protein R11A8.6 protein.
Length = 1141
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +1
Query: 247 MIAKEEDLI-----SARIPNKYRDYCAHYLLDYQ---VCRYKEMPLLYRCAHEKHNYLNC 402
+IAK++ +I S + ++ DY Y+ D + R KEM L R A KH+Y C
Sbjct: 342 VIAKDQKMICPVDESGKYTSEVPDYQGVYVKDADKLIIKRLKEMGNLVRQAEVKHSYPFC 401
Query: 403 EQQDYVLRMK 432
+ D L K
Sbjct: 402 WRSDTPLLYK 411
>AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear receptor
NHR-59 protein.
Length = 416
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 135 HGANYGRISCSLCGPEFRR 191
HGA++G I+C C FRR
Sbjct: 28 HGAHFGAITCRACAAFFRR 46
>AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 59 protein.
Length = 416
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 135 HGANYGRISCSLCGPEFRR 191
HGA++G I+C C FRR
Sbjct: 28 HGAHFGAITCRACAAFFRR 46
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 135 HGANYGRISCSLCGPEFRR*SYF*PSSWIS 224
HG ++G ++C C FRR S S WI+
Sbjct: 52 HGTHFGAVTCRACAAFFRRSS---KSKWIN 78
>AF016421-11|AAM45373.2| 417|Caenorhabditis elegans Hypothetical
protein F44E7.8 protein.
Length = 417
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 126 HFHHGANYGRISCSLCGPEFRR 191
H HG ++G +SC C FRR
Sbjct: 31 HTAHGVHFGVLSCRACAAFFRR 52
>AF016685-2|AAG24148.1| 404|Caenorhabditis elegans Hypothetical
protein F59E11.10 protein.
Length = 404
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 135 HGANYGRISCSLCGPEFRR 191
HG +YG +SC C FRR
Sbjct: 29 HGNHYGVVSCRACAAFFRR 47
>AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical
protein F56A4.6 protein.
Length = 796
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 187 DDNPTFDPQAGFPYERKQREMIAKEEDLISARIPNKYR 300
DDN +D FPY+ R+M ++ +++ R+ N YR
Sbjct: 150 DDNKPYDKLPKFPYQFDLRDM--RDISVLTQRLFNPYR 185
>Z68218-3|CAA92473.1| 325|Caenorhabditis elegans Hypothetical
protein K01H12.3 protein.
Length = 325
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 138 GANYGRISCSLCGPEFRR 191
G ++G ISC+ CG FRR
Sbjct: 12 GYHFGAISCAACGAFFRR 29
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 126 HFHHGANYGRISCSLCGPEFRR*SYF*PSSWISIRKKTTRN 248
H HG ++G SC C FRR + S W S +K T+N
Sbjct: 57 HGAHGNHFGATSCRACAAFFRRAA---NSKW-SFQKCQTQN 93
>AF022978-2|AAG24183.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 130 protein.
Length = 440
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 135 HGANYGRISCSLCGPEFRR 191
HG ++G ISC C FRR
Sbjct: 45 HGNHFGAISCRACAAFFRR 63
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 229 ERKQREMIAKEEDLISARIPNKYRDYCAH--YLLDYQVCRYK 348
ERK+ EM+ EDL+ +P +Y H Y L+ + +++
Sbjct: 813 ERKKWEMMQMREDLVKRPLPTVMSEYKNHPLYALEKDLLKFE 854
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,782,287
Number of Sequences: 27780
Number of extensions: 205999
Number of successful extensions: 717
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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