Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E14
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   2.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.3  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     24   9.7  

>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 54  NKILALLXMYSCIIS*SAWGIVFGNSFYXLLNIYKFYTFVYRE-NICTF 197
           N ++  L   S I+  S+W  V   SF+ L  I  F TF+ R    C F
Sbjct: 75  NALVTGLATSSGILLYSSWASVMQESFHFLEKISMFDTFLVRVFQFCAF 123


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 117  LFPKHFSLLYNYTSXVELEFYFEIY 43
            ++  H SLL+++   VEL+  F IY
Sbjct: 2701 VYQSHVSLLHHFQEIVELQEAFGIY 2725


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 123 GNSFYXLLNIYKFYTF-VYRENICTFVNKIKK 215
           G  F  ++NIY FY +  Y EN   F    KK
Sbjct: 68  GTGFDFIMNIYFFYQYSTYLENF-VFARNAKK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,702
Number of Sequences: 5004
Number of extensions: 21293
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)