Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E13
(768 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.88
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.88
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.88
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.6
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.6
DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase rever... 22 4.7
AM712901-1|CAN84640.1| 205|Tribolium castaneum hypothetical pro... 22 4.7
AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH trans... 22 4.7
DQ855492-1|ABH88179.1| 251|Tribolium castaneum chemosensory pro... 22 6.2
AM292375-1|CAL23187.2| 311|Tribolium castaneum gustatory recept... 22 6.2
EF222294-1|ABN79654.1| 451|Tribolium castaneum ecdysis triggeri... 21 8.2
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.88
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 415 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 311
LP V + + LL T FN FM+ +V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.88
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 415 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 311
LP V + + LL T FN FM+ +V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.88
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 415 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 311
LP V + + LL T FN FM+ +V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 418 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 311
++P + + L+ T FN FM+ +V L + L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 418 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 311
++P + + L+ T FN FM+ +V L + L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298
>DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase reverse
transcriptase protein.
Length = 596
Score = 22.2 bits (45), Expect = 4.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 526 LQPNH*IKHRGKIW 567
L PN+ I+H+ K+W
Sbjct: 407 LPPNYEIRHKFKLW 420
>AM712901-1|CAN84640.1| 205|Tribolium castaneum hypothetical
protein protein.
Length = 205
Score = 22.2 bits (45), Expect = 4.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 609 QLTAKVDPSLIGGMVVSIGDKYVDMSVXSKVXKYTELI 722
QLTA V ++ G + + I D Y+ + K K+ ++
Sbjct: 4 QLTACVGSAIAGFLFLLICDSYLKIYHKEKYRKFCRIL 41
>AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH
transcription factor protein.
Length = 193
Score = 22.2 bits (45), Expect = 4.7
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 186 VQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIKTDAKLKEF 326
+Q L RY L+ S ALD+ +G + D LK F
Sbjct: 134 IQTLKLAARYIDFLYHVLSNENALDV--DLIGNVCSYVVRDKLLKAF 178
>DQ855492-1|ABH88179.1| 251|Tribolium castaneum chemosensory
protein 6 protein.
Length = 251
Score = 21.8 bits (44), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 606 LQLTAKVDPSLIGGMVVSIG 665
LQ T +L+GG+V S+G
Sbjct: 208 LQATVSFGTNLVGGIVRSLG 227
>AM292375-1|CAL23187.2| 311|Tribolium castaneum gustatory
receptor candidate 54 protein.
Length = 311
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 95 KYICTRRIIFFKLLAFIDQLFLAQGA 18
+YI +I K+++F++ +FL A
Sbjct: 6 QYINRSELITSKIVSFVNSIFLVMSA 31
>EF222294-1|ABN79654.1| 451|Tribolium castaneum ecdysis triggering
hormone receptorisoform B protein.
Length = 451
Score = 21.4 bits (43), Expect = 8.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 554 LCLI*WFGCNNFTSYFTPVGSHHNLKSINDSLQFV 450
+CL+ WF FTS + + + ++ S+ FV
Sbjct: 190 ICLLAWFIAALFTSPILAITQYGPEEYVDGSIVFV 224
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,456
Number of Sequences: 336
Number of extensions: 3748
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -