Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E13
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 114 6e-26
02_05_0759 + 31545473-31546204 67 1e-11
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423 31 1.0
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 30 2.3
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 29 5.4
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778... 28 7.1
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 28 9.4
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 114 bits (275), Expect = 6e-26
Identities = 61/189 (32%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Frame = +3
Query: 138 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIKTDA 311
R ++ VA + + +K P ++G G YASALF A+K LD VE E+ ++ K
Sbjct: 23 RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82
Query: 312 KLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMM 491
+FI + ++ + +V A+ + + S T N L +LA+NGRL ++ + F +
Sbjct: 83 LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142
Query: 492 AAHRGEVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDK 671
AH+GEV V T PL + + + L+ L+ L N+T+ + K+D S++GG+V+ G K
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202
Query: 672 YVDMSVXSK 698
DMS+ ++
Sbjct: 203 VFDMSIKTR 211
>02_05_0759 + 31545473-31546204
Length = 243
Score = 67.3 bits (157), Expect = 1e-11
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Frame = +3
Query: 213 YASALFSAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKI 392
YA+AL AS+ L+ +L + ++ +A + EF NPT+ R K + +A
Sbjct: 64 YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122
Query: 393 SLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNLEA 572
L N L ++ +NGR + ++ F+ + G EV T + Q + Q+L
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTG---TEVATVTSVVQLESQDLAQ 179
Query: 573 ALKKF--LKGNETLQLTAKVDPSLIGGMVVSI---GDKYVDMSVXSKVXKYT 713
++ L G + +++ ++DP LI G + G +DMSV ++ + T
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMSVRKQIEEIT 231
>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
Length = 529
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +3
Query: 522 VVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIG---DKYVDMSVX 692
V +A LD Q + + +++ + G +L + VDPSLI G VV G +D+SV
Sbjct: 449 VSSAVELDARQTELIARKMRR-ITGFASLTIENVVDPSLIAGFVVCYGPGESHVIDLSVK 507
Query: 693 SKV 701
K+
Sbjct: 508 GKL 510
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 496 AAIIILKALMTASSLSKRPFSASNPSRLPVVG 401
AA+ +L+ A+++ +RP + P RLPV+G
Sbjct: 15 AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 540 LDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVXSKVXKYTEL 719
L+ Q + + + K L G+ + ++ P L G +++IG Y D+ KV KY+ +
Sbjct: 659 LNSKQPKQEKDDIAKILLGSSSAAISGISKP-LFGYFIMTIGVAYYDLDAKRKVSKYSLI 717
Query: 720 ISAA 731
A
Sbjct: 718 FFTA 721
>03_02_0358 +
7784067-7784128,7784239-7785040,7785513-7785617,
7785835-7786194
Length = 442
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 528 TAKPLDQAQR-QNLEAALKKFLKGNETLQLTAKVDPSLIGGM 650
T P+D A R + +E+ L+ L+G T DPS G +
Sbjct: 170 TGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/94 (22%), Positives = 43/94 (45%)
Frame = +3
Query: 327 IINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRG 506
++ PT R ++ L+ +A+ + L+P+ LL L+ E+G + A + +M H
Sbjct: 81 VVTPTRARPLQAYYLRRLAHTLRLAPSP--LLWLVVESGAATRDTAALLRGCGVMYRHLS 138
Query: 507 EVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETL 608
+ +P + +RQ+ A + + N L
Sbjct: 139 SPVPDAPQDRPRRRGRRQDRPAVDSRARQRNTAL 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,343,951
Number of Sequences: 37544
Number of extensions: 390817
Number of successful extensions: 999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -