Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E13
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...   195   3e-50
U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...   193   1e-49
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    29   4.8  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    29   4.8  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    29   4.8  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    29   4.8  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    29   4.8  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    29   4.8  
Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    28   6.4  
Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score =  195 bits (475), Expect = 3e-50
 Identities = 94/217 (43%), Positives = 147/217 (67%), Gaps = 2/217 (0%)
 Frame = +3

Query: 90  IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 263
           ++L  +   +   L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+SA  K   LD 
Sbjct: 12  LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71

Query: 264 VEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 443
           +  +L   +   K + K +EF+++PTLK + K  A++ ++ K+ L+  TGN LGLLAENG
Sbjct: 72  ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131

Query: 444 RLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAK 623
           RL+KLE+V+++F+ +M AHRGE+  +V +A+ L  + ++ L  AL K  K  + L +T  
Sbjct: 132 RLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYA 191

Query: 624 VDPSLIGGMVVSIGDKYVDMSVXSKVXKYTELISAAV 734
           V PS++GG+VV+IGDKYVD+S+ S+V KY + ++ A+
Sbjct: 192 VKPSILGGLVVTIGDKYVDLSIASRVKKYKDALATAI 228


>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score =  193 bits (470), Expect = 1e-49
 Identities = 93/204 (45%), Positives = 142/204 (69%), Gaps = 2/204 (0%)
 Frame = +3

Query: 129 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIK 302
           L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+SA  K   LD +  +L   +   K
Sbjct: 4   LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63

Query: 303 TDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFK 482
            + K +EF+++PTLK + K  A++ ++ K+ L+  TGN LGLLAENGRL+KLE+V+++F+
Sbjct: 64  DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123

Query: 483 IMMAAHRGEVTCEVVTAKPLDQAQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSI 662
            +M AHRGE+  +V +A+ L  + ++ L  AL K  K  + L +T  V PS++GG+VV+I
Sbjct: 124 SIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTI 183

Query: 663 GDKYVDMSVXSKVXKYTELISAAV 734
           GDKYVD+S+ S+V KY + ++ A+
Sbjct: 184 GDKYVDLSIASRVKKYKDALATAI 207


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical
           protein F26H9.8 protein.
          Length = 1377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
 Frame = +3

Query: 558 QNLEAALKKFL-KGNETLQ---LTAKVDPSLIGGMVVSIGDKYVDM-SVXSKVXKYTELI 722
           QNL   L++ + KG ETL+   + +  +   I G V++ GD +VD+ ++  KV +  +++
Sbjct: 323 QNLNETLQRSIQKGQETLEAKGIESGTNILAINGRVIAKGDSFVDLFALMEKVEEEKKMV 382

Query: 723 SAAV 734
           +  V
Sbjct: 383 NEFV 386


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical
           protein F26H9.8 protein.
          Length = 1377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
 Frame = +3

Query: 558 QNLEAALKKFL-KGNETLQ---LTAKVDPSLIGGMVVSIGDKYVDM-SVXSKVXKYTELI 722
           QNL   L++ + KG ETL+   + +  +   I G V++ GD +VD+ ++  KV +  +++
Sbjct: 323 QNLNETLQRSIQKGQETLEAKGIESGTNILAINGRVIAKGDSFVDLFALMEKVEEEKKMV 382

Query: 723 SAAV 734
           +  V
Sbjct: 383 NEFV 386


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 231 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 407
           S  + +K   ++ KEL  F +S K+  ++ +F+I   + +     +++  V  ++    T
Sbjct: 110 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 169

Query: 408 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 512
           +G +   + +  +   +  +    K+   +H G V
Sbjct: 170 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 204


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 231 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 407
           S  + +K   ++ KEL  F +S K+  ++ +F+I   + +     +++  V  ++    T
Sbjct: 235 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 294

Query: 408 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 512
           +G +   + +  +   +  +    K+   +H G V
Sbjct: 295 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 329


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 231 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 407
           S  + +K   ++ KEL  F +S K+  ++ +F+I   + +     +++  V  ++    T
Sbjct: 160 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 219

Query: 408 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 512
           +G +   + +  +   +  +    K+   +H G V
Sbjct: 220 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 254


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 231 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 407
           S  + +K   ++ KEL  F +S K+  ++ +F+I   + +     +++  V  ++    T
Sbjct: 173 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 232

Query: 408 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 512
           +G +   + +  +   +  +    K+   +H G V
Sbjct: 233 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 267


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 231 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 407
           S  + +K   ++ KEL  F +S K+  ++ +F+I   + +     +++  V  ++    T
Sbjct: 187 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 246

Query: 408 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 512
           +G +   + +  +   +  +    K+   +H G V
Sbjct: 247 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 281


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 231 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 407
           S  + +K   ++ KEL  F +S K+  ++ +F+I   + +     +++  V  ++    T
Sbjct: 234 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 293

Query: 408 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 512
           +G +   + +  +   +  +    K+   +H G V
Sbjct: 294 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 328


>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 424 PSRLPVVGERLILLATCFNASTFMLLFN 341
           P+  PV+GE  ++ ATCF    F L  N
Sbjct: 51  PTWYPVMGEAWVIRATCFGVLVFNLYSN 78


>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 558 QNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVS 659
           QNL  ++KK L G  T + T  +DP+ +  ++ S
Sbjct: 579 QNLYFSVKKSLDGKRTRRATGSIDPTKLPNLLAS 612


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
           protein 3, isoform a protein.
          Length = 1358

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 280 PSSFSTMSSALVFDAAEKRAEAYRPSNPNTCTGGF 176
           PS+ S MSS       EK+A+ Y+   P    GGF
Sbjct: 808 PSNVSNMSSRAELAGYEKQADEYKRHEPWYTVGGF 842


>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 364 STFMLLFNVGLMMNSLSFASVLIDC*NWPSSFSTMSSALVFDAAEKRAEAYRPSNPNTCT 185
           +TF++L    L    + + + ++    +P+  ST S A    A+        PSN NTC 
Sbjct: 47  ATFLVLLTYFLTKGRV-YETEIVTSSTFPALPSTSSKADSTSASTTTLLTPAPSNINTCV 105

Query: 184 GGFT 173
            GFT
Sbjct: 106 FGFT 109


>AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical
           protein K02F6.3 protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 540 LDQAQR-QNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVS--IGDKYVDMSVXSKVXKY 710
           LDQ  + QNL  ++KK L    T + T  +DP+ +  ++ S  +G     +   SKV   
Sbjct: 578 LDQISKLQNLYFSVKKSLDEKRTRRATGSIDPAKLPNLLASQDLGKGLNLLRQLSKVYDK 637

Query: 711 TELISAA 731
             ++S A
Sbjct: 638 KNVVSTA 644


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,979
Number of Sequences: 27780
Number of extensions: 348271
Number of successful extensions: 917
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)