Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E12
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 386 e-108
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 31 0.27
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 30 0.36
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 29 0.82
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 4.4
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 4.4
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 4.4
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 5.8
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 7.6
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 7.6
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 386 bits (950), Expect = e-108
Identities = 172/261 (65%), Positives = 214/261 (81%), Gaps = 2/261 (0%)
Frame = +3
Query: 63 PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 242
PVV++ GDEMTR+IW +I+EKL+LP++DI+L YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19 PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78
Query: 243 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 422
VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW PI
Sbjct: 79 VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138
Query: 423 IIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHV--VHEYKGAGVALAMFNTDAS 596
IGRHA DQYK+TD V G G LE+ F P+ + K V+E+ G+GVA++M+NTD S
Sbjct: 139 CIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDS 198
Query: 597 IIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGIWYEH 776
I FAHSSF+ AL +K PLYLSTKNTILKKYDGRFKD FQ++Y+ +YK++FE+ G+WY+H
Sbjct: 199 IRGFAHSSFQMALQKKMPLYLSTKNTILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQH 258
Query: 777 RLIDDMVAYAMKSXGGFVWAC 839
RLIDDMVA A+KS GGFVWAC
Sbjct: 259 RLIDDMVAQAIKSNGGFVWAC 279
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 30.7 bits (66), Expect = 0.27
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 75 ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 251
I GD + R + + E + IE D+ GME +K+ + +++K+ VG+
Sbjct: 26 IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85
Query: 252 KCATITPDEK 281
K TP EK
Sbjct: 86 KGILFTPFEK 95
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 30.3 bits (65), Expect = 0.36
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Frame = -1
Query: 557 TLVLMNYMFYCLTRFRFEDYFKSTSTWDNKVSCF--------VLISMSMTSNDDGFVPPC 402
+L +Y + C T F + K ++ + CF + I + +D GFV P
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296
Query: 401 YKSRYILANNSLPENSTTKNITDGPIRAFPHFLQFKFF--NSLLI 273
Y YIL N + S T + + + F F+ F SLL+
Sbjct: 297 YCISYILKNQNEKIVSITSKLLNQLDKRFSEFVSLFGFREGSLLL 341
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 29.1 bits (62), Expect = 0.82
Identities = 18/95 (18%), Positives = 41/95 (43%)
Frame = +3
Query: 513 ESGEAIKHVVHEYKGAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYD 692
+SG+ + H V Y+G + A+ D + D K ++R Y + + I++
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIK 213
Query: 693 GRFKDIFQDIYDREYKKQFEDAGIWYEHRLIDDMV 797
+ + D +++E + + + + + L D V
Sbjct: 214 EKLCYVALD-FEQELQTAAQSSSLEKSYELPDGQV 247
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 594 SIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGI 764
S+ AH+S + +Y + L+ K+ Y K + + R++K +FED GI
Sbjct: 297 SVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKF-RDFKHKFEDVGI 352
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -1
Query: 476 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 333
D+K + L+S +++S + VPP KSR I+A+ + +S K+ D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 644 FSVQSKLE*RMSKVNNRCISVKHSQ--CYTCTLVLMNYMFYCLTRFRFE 504
F+ ++ L+ + + NN +++ S C TC ++ N F+C F F+
Sbjct: 35 FTKENNLKSNIFEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFD 83
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 663 TKNTILKKYDGRFKDIFQDIYDREYKKQFEDAG 761
T+ T+L DG+FKDIF + + ++E G
Sbjct: 414 TQETLLGLLDGKFKDIFDKCIIIDCRFEYEYLG 446
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 430 PMMMGLSHPVTSLGIFLQIIASLKTVP 350
P +MG + VT+ ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 123 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 233
+LI+ F D ELH + N+ + D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,680
Number of Sequences: 5004
Number of extensions: 78479
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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