Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E11
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 44 2e-05
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 40 3e-04
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 36 0.004
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.10
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 1.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.0
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 5.2
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 26 5.2
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 9.0
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 9.0
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 44.0 bits (99), Expect = 2e-05
Identities = 32/127 (25%), Positives = 56/127 (44%)
Frame = +2
Query: 227 VEEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLLVKXXXXX 406
+++V F T GL+ ++ + +YG N L + G S W+++L Q + +
Sbjct: 15 IKDVESEFLTSIPNGLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQVLNAM------- 67
Query: 407 XXXSFVLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPEMGK 586
VL L + ++E VI I++ N VG QE AE +++L+ M
Sbjct: 68 ---CVVLILAAALSFGTTDWIEGGVISAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAH 124
Query: 587 VIXGDKS 607
V K+
Sbjct: 125 VTRSSKT 131
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 39.9 bits (89), Expect = 3e-04
Identities = 33/112 (29%), Positives = 55/112 (49%)
Frame = +2
Query: 230 EEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLLVKXXXXXX 409
EE+L+ TDP GL+ +++ ++KYG N++ E+ +I ++F V
Sbjct: 163 EELLE---TDPKYGLTESEVEERKKKYGLNQMKEEKTNNI-----KKFLSFFV------G 208
Query: 410 XXSFVLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKE 565
FV+ L +V+ VI +L+ NA VG QE A S ++ LK+
Sbjct: 209 PIQFVMELAAALAAGLRDWVDFGVICALLLLNATVGFVQEYQAGSIVDELKK 260
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 36.3 bits (80), Expect = 0.004
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Frame = +2
Query: 224 SVEEVLKYFGTDPDKGLSP-DQIKRNQEKYGPNELPTEEGKSIWQLVLEQF-DDLLVKXX 397
SVE+ TD GLS +I R + +G N+L E+ +++ L+QF D L+
Sbjct: 9 SVEQTCADLETDMYNGLSSLQEITRRNKVHGDNDLKVEDEENMVVQFLKQFVKDPLILLL 68
Query: 398 XXXXXXSFVLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPE 577
S L +DA S I L ++ VG QE +E +++AL P
Sbjct: 69 FASSAISVTLG---NIDDAIS-------IALAIVIVVTVGFVQEYRSEQSLKALNNLVPH 118
Query: 578 MGKVIXGDKS 607
VI K+
Sbjct: 119 YCNVIRSGKT 128
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.5 bits (68), Expect = 0.10
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 600 SPXMTLPISGSYSFKASMADSAFLSCHTPTTALAIRISKITK-GSTKAENASSCSSNKAN 424
S + P+S + S A+ A S LS TTA + + ++ ST A +ASS N
Sbjct: 418 SSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVN 477
Query: 423 TNEIIAANSKILTKRSS 373
+ +A+S LT +S
Sbjct: 478 STTATSASSTPLTSVNS 494
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 232 FHGFRVSVLHGGITMLPSVRFTYSLVPVT 146
F F ++ L GG+T LP + F Y L T
Sbjct: 2 FFAFLITYLLGGVTFLPFILFIYLLTRPT 30
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 323 LPTEEGKSIWQLVLEQFDD 379
+PT +GK+I+++ LE FDD
Sbjct: 110 VPTIDGKNIFEIDLESFDD 128
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 143 TSYRDQAISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKG 271
T+ QA+ + R ++ T + +S ++L+YF T+PD G
Sbjct: 456 TTPEQQAVWDVFQRIYTRFTGSEGSKESFIKLLEYFVTEPDNG 498
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 17 FIAFGRPMARXATITPLSSWGALTSLDNXYXPKKNTI 127
F+ P+A +T + WG L+ LD P +N++
Sbjct: 196 FVGTREPLATADWLTIETQWGELSKLDIQIQPYENSL 232
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 260 PDKGLSPDQIKRNQEKYGPNELPTEEGKSI 349
PD L Q K N+E PN+LP +E K +
Sbjct: 195 PDDQLPKPQPK-NEEPAAPNDLPKQEEKEL 223
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LALFEEHEDAFSAFVEPFVILLILI--ANAVVGVWQERNAESAIEALKEYE 571
+A + HED A F L++ A+AVV VW++ E + +E E
Sbjct: 584 VATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWKDVTEEYIAKQAEELE 634
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 322 FIGSIFFLVPF-YLVWTKAFVWVCAKIF 242
F G +F VP Y+V F ++C K+F
Sbjct: 202 FEGLFWFFVPVCYVVCNDVFAYLCGKMF 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,599
Number of Sequences: 5004
Number of extensions: 44322
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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