Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E09
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-7|CAA94292.3|  431|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine rece...    27   9.2  
AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine r...    27   9.2  

>Z70286-7|CAA94292.3|  431|Caenorhabditis elegans Hypothetical
           protein K08C7.1 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 520 KQFIIQHLYFFVTNILINFHLLNYILCKNYTLLTTIRNIL 639
           KQF  Q + F +   LI  H LN++  +N T+L  I  I+
Sbjct: 48  KQFTFQSVGFGLAVGLIPLHFLNFLGTRNVTILYGIVGII 87


>U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 3 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/76 (21%), Positives = 34/76 (44%)
 Frame = +1

Query: 367 LYRCYTDYI*FIFLIPKITFKMKTSKCIIGIITVSDNYFRKFHTTLFLSI*KQFIIQHLY 546
           +Y C   Y+  I  +  I   +    C++  +T S N+ +K    L +     F++    
Sbjct: 101 IYYCLLSYLIAIKPVIHIFIAVNRMSCVMFPVTYSQNWSQKLRIMLIVIFLAPFLV---- 156

Query: 547 FFVTNILINFHLLNYI 594
             + N+LI+ + + Y+
Sbjct: 157 --IWNVLISDNFIGYV 170


>AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine
           receptor, class z protein79 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 670 LNDFYLMIHIIICCEWSLIMCSFYIICN 587
           ++ FY M+ I  C    LI C+  I+CN
Sbjct: 62  VSHFYGMVKITYCMFGILIFCNIMILCN 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,281,706
Number of Sequences: 27780
Number of extensions: 210112
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)