Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E08
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   3.8  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.0  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   6.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   6.6  

>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 141 QTNAQLVIGLRASDMEILIQKSNILKKLKK 52
           Q+ ++LVIG     M + IQ+SN+  +L K
Sbjct: 222 QSESRLVIGWSDQIMIVSIQRSNVANELPK 251


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 102 RKLSNQ*RVVRSFVRLMIIMTYAEWCS--LCIRHLCGIRNWYPIINCTFIVS 251
           +K++N      SFV+ ++ +   +  +  LC R +C +  +Y +++C  IV+
Sbjct: 74  KKVTNNGLPFSSFVKSIVGILEVDASNEILCFRRICLLCVFYKLLSCDHIVN 125


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 93  FPCRKLSNQ*RVVRSFVRLMIIMTYAEWCSLCIRHL 200
           + C   +N+   ++ FVRL  ++  +E  +LCI+ L
Sbjct: 61  YVCSITANKSTNLKHFVRLFFLLGDSERVNLCIKRL 96


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 53  FFSFFKILLFWIKISMSEALKPITSCAFVCTAHDNN 160
           +F F+ +L  WI +  +   + +T C  V   +D N
Sbjct: 235 WFFFYTLLYPWIALVSAFVAETMTLCCIVTIFYDKN 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,555
Number of Sequences: 5004
Number of extensions: 20870
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)