Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E08
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome (mul...    28   3.3  
AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    27   5.7  
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    26   10.0 

>Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical
           protein F35G2.1a protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
 Frame = +3

Query: 144 RLMIIMTYAEWCSLC------IRHLCG-IRNWYPIINCTFI 245
           R  ++  YA+WC  C       R     +R+WYP++    I
Sbjct: 69  RAFLVEFYADWCGHCRAFAPYFRQFANMVRDWYPVVTVAVI 109


>AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome
           (multiexonuclease complex)component protein 2 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 83  WIKISMSEALKPITSCAFVCTAHDNNDVCGVVFTLHTSFVRH*ELVS 223
           W+ +SMSEA   I     V   H   D        H ++VR  E+VS
Sbjct: 14  WMMLSMSEARNDIDETKIVIPGHSVCDAPQQFMRGHGTYVRDGEIVS 60


>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +2

Query: 26  LVGFCMEAYFFSFFKILLFWIKISMSEALKPITSCAFVCTAHDNNDVCG 172
           +V  C+  Y  S   ++++W  ++  +ALK I +       +D+ ++ G
Sbjct: 139 IVRICILTYLPSLLFVIVYWSDVANEDALKRIVNSFHPEYIYDSKEIWG 187


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 214 FLMPHK*RMQSEHHSAYVIIIMSRTNERTTRYWFE 110
           F   H   M+   H    +  MSR+N+   RYWF+
Sbjct: 656 FKQYHLPTMKELEHLPKQLRYMSRSNKTDNRYWFD 690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,375,221
Number of Sequences: 27780
Number of extensions: 116686
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)