Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E08
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   0.83 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   3.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 136 ERTTRYWFESFRHGNF 89
           ER  + WF+ FR G+F
Sbjct: 40  ERQCQNWFDKFRSGDF 55


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 163 RMRSGVHSAYVICAALGTGIP 225
           RMR G+H+  V+   +G  +P
Sbjct: 582 RMRIGIHTGMVLAGVVGKKMP 602


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 178 HHSAYVIIIMSRTNERTTRYWFESF 104
           +H   +  I+  TNE+ TRY    F
Sbjct: 57  NHIQNIFKIIKSTNEKITRYIIRMF 81


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 178 HHSAYVIIIMSRTNERTTRYWFESF 104
           +H   +  I+  TNE+ TRY    F
Sbjct: 40  NHIQNIFKIIKSTNEKITRYIIRMF 64


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 110  LKPITSCAFVCTA 148
            ++P+ SCA  CTA
Sbjct: 1705 MRPVVSCASGCTA 1717


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 1   IRINFLYYFSWILYG 45
           I I FLY  SW  YG
Sbjct: 277 ITICFLYVLSWTPYG 291


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 149 HDNNDVCGVVF 181
           +DN +VCG+ F
Sbjct: 86  NDNEEVCGIYF 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,928
Number of Sequences: 438
Number of extensions: 1294
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)