Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E06
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    28   1.5  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   3.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   4.5  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   4.5  
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...    26   7.8  

>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +2

Query: 212 FRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYPEISSHSLQY 391
           FR + W N+I  +   L      LLPV      ++LRW+ +   +ET R    +      
Sbjct: 256 FRWIFWVNMIYMFVMYLT-----LLPVPETYAPVLLRWRAQRIRKETGRQVFTAQEKQML 310

Query: 392 SSMIIAGLNTTR 427
           S   I  +N TR
Sbjct: 311 SFKEIVQVNLTR 322


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 560 PPDIN-WNDSAIYEIIKRILRVDAYDNSNALRGIYALEEI 676
           PPD+  W   ++ +I  RIL +DA +N +AL   Y  E++
Sbjct: 125 PPDLERW--MSLMDIWLRILEIDAEENGSALMKKYMGEDL 162


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 849  FSNTGNTSSVLQERPPCA*NEFNLGLSGNLNANDKLFDN----SVAPRSESLNSTASTTS 682
            FS++ +  S L      +    ++G+  + ++N K+  N    +V+P S S++ T S  +
Sbjct: 3641 FSSSSSEPSTLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSISDTKSPAT 3700

Query: 681  RVISS 667
              ISS
Sbjct: 3701 VTISS 3705


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = -3

Query: 792 NEFNLGLSGNLNA--NDKLFDNSVAPRSESLNSTASTTSRVISSRAYIPLKALLLSYAST 619
           N  N  +SG++    +  L +++VAP S   +S  +TTS + +S A  PL    ++  ST
Sbjct: 591 NSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTST 650

Query: 618 LKMRLIIS*IALSFQFMSGGSSTSGMIVSVSF 523
                  +   L     S  SS S ++ + +F
Sbjct: 651 FTSSGFNTTSGLPTSSASTPSSNSSIVPTSTF 682


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 786 FNLGLSGNLN-ANDKLFDNSVAPRSESLNSTASTTSRVISSRAYIP 652
           F+ G S  LN A+     NS  P+S +LN+T + ++  I S   IP
Sbjct: 28  FDHGSSEKLNRASLPKTQNSAIPQSNALNTTPNESTSQIDSSPKIP 73


>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 7/28 (25%), Positives = 20/28 (71%)
 Frame = +2

Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPV 292
           +F +  +KN + +WR++++T ++ +L +
Sbjct: 26  RFEVACYKNKVTEWRNKIETDLDEVLQI 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,491
Number of Sequences: 5004
Number of extensions: 68875
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)