Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E06
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 32 0.67
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 31 1.5
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 30 2.0
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 29 3.6
10_07_0005 - 11744073-11745653 28 8.3
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 28 8.3
03_05_0519 - 25131614-25134778 28 8.3
>02_04_0067 - 19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 31.9 bits (69), Expect = 0.67
Identities = 16/78 (20%), Positives = 31/78 (39%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYPEISSHSLQ 388
+ + IWK + WR +V +L I+ + +L WQ N + +
Sbjct: 1127 QLKACIWKQCLSYWRSPSYNLVRILFITISCIVFGVLFWQQGDINHINDQQGLFTILGCM 1186
Query: 389 YSSMIIAGLNTTRMSIAY 442
Y + + G+N + I +
Sbjct: 1187 YGTTLFTGINNCQSVIPF 1204
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 179 PQRKEAGAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQV 331
P + F +F+L +WK WR +V + + T ++ + W+V
Sbjct: 1224 PSQYSQSTFNQFKLCLWKQWWTYWRSPDYNLVRIFFALFTALMLGTIFWRV 1274
>12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/88 (17%), Positives = 33/88 (37%)
Frame = +2
Query: 179 PQRKEAGAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIR 358
P R +F+ +WK + WR +V ++ + + +L WQ +
Sbjct: 1035 PTRFPQKFLEQFKACLWKQFLSHWRTPSYNLVRIVFMAFSSIIFGVLYWQQGNIRHINDQ 1094
Query: 359 YPEISSHSLQYSSMIIAGLNTTRMSIAY 442
+ Y I G+N ++ ++ +
Sbjct: 1095 QGLFTILGCMYGITIFTGINNSQSAMPF 1122
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/71 (21%), Positives = 33/71 (46%)
Frame = +2
Query: 203 FTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYPEISSHS 382
F ++ +WK + WR+ T V VI + + W+ + RET ++ ++
Sbjct: 1156 FAQYAACLWKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWKF-GSRRET-QHDIFNAMG 1213
Query: 383 LQYSSMIIAGL 415
Y++++ G+
Sbjct: 1214 AMYAAVLFIGI 1224
>10_07_0005 - 11744073-11745653
Length = 526
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 260 LQTVVELLLPVITMTLILILRWQVEPTNRETIRYPEISSHSLQYSSMIIAGLNTTRMSIA 439
+Q V +++LP +T WQ + R +P SS + + AG+N + A
Sbjct: 92 MQDVRDVILPGLT-------HWQ---SPRHFAHFPASSSTAGALGEALAAGINVVPFTWA 141
Query: 440 YSPTSPELEDVV 475
SP + ELE VV
Sbjct: 142 ASPAATELEMVV 153
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +2
Query: 527 DTETIMPEVELPPDINWNDSAIYEIIKRILRVDAYDNSNALRGI----YALEEITREVVL 694
DTE I+PE++LP + DS +++I L +D S + + E + R L
Sbjct: 1082 DTEIILPEIDLP--VGMVDSFVHDIGGLDLVFSKFDVSGIAQSLSKDSIKTEPVERLPSL 1139
Query: 695 AVEFNDSL----LGATELSNNL 748
A +D + G+ EL NNL
Sbjct: 1140 ASILSDKIDMAWSGSCELHNNL 1161
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Frame = +2
Query: 227 WKNLIQQWRHRLQTVV------------ELLLPVITMTLILILRWQVEPTNRE 349
W N ++ W H TV+ E++LP + + L L+L W+ RE
Sbjct: 868 WANRVRTWTHPTTTVLVHALLVAVVLCPEMILPTVCLYLFLVLLWRYRARPRE 920
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,172,690
Number of Sequences: 37544
Number of extensions: 384089
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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