Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E06
(854 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY219711-1|AAP21093.1| 2595|Homo sapiens ABCA12 transporter subf... 39 0.027
AC072062-1|AAY24276.1| 2413|Homo sapiens unknown protein. 39 0.027
AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein p... 39 0.027
AF328787-1|AAK00959.1| 2146|Homo sapiens ABC transporter member ... 38 0.046
AF311102-1|AAN04657.1| 2146|Homo sapiens ABC transporter ABCA7 p... 38 0.046
AF250238-1|AAF85794.1| 2146|Homo sapiens macrophage ABC transpor... 38 0.046
X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein. 37 0.11
DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette, s... 37 0.11
BC062779-1|AAH62779.1| 209|Homo sapiens ABCA3 protein protein. 37 0.11
BC020724-1|AAH20724.1| 209|Homo sapiens ABCA3 protein protein. 37 0.11
AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane ... 37 0.11
U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein. 36 0.14
AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein. 34 0.57
AK126220-1|BAC86492.1| 122|Homo sapiens protein. 34 0.57
BC142693-1|AAI42694.1| 272|Homo sapiens Unknown (protein for MG... 34 0.76
BC141816-1|AAI41817.1| 272|Homo sapiens Unknown (protein for MG... 34 0.76
AL359846-6|CAH73579.1| 2261|Homo sapiens ATP-binding cassette, s... 34 0.76
AL353685-3|CAH72444.1| 2261|Homo sapiens ATP-binding cassette, s... 34 0.76
AL353685-2|CAH72443.1| 363|Homo sapiens ATP-binding cassette, s... 34 0.76
AK024328-1|BAB14887.1| 363|Homo sapiens protein ( Homo sapiens ... 34 0.76
AF287262-1|AAK43526.1| 2261|Homo sapiens ATP-binding cassette 1 ... 34 0.76
AF285167-1|AAF98175.1| 2261|Homo sapiens ATP-binding cassette tr... 34 0.76
AF275948-1|AAF86276.1| 2261|Homo sapiens ABCA1 protein. 34 0.76
AF258627-1|AAF69513.1| 100|Homo sapiens ATP binding cassette tr... 34 0.76
AF258626-1|AAF69516.1| 100|Homo sapiens ATP binding cassette tr... 34 0.76
AB055982-1|BAB63210.1| 2261|Homo sapiens ABCA1 protein. 34 0.76
AB037924-1|BAB07875.1| 70|Homo sapiens ABC1 protein. 34 0.76
Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein. 33 1.7
U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette tran... 33 1.7
AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter pro... 33 1.7
AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette tr... 33 1.7
AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein p... 33 1.7
AJ131244-1|CAA10334.1| 1078|Homo sapiens Sec24A protein protein. 32 3.1
>AY219711-1|AAP21093.1| 2595|Homo sapiens ABCA12 transporter
subfamily A protein.
Length = 2595
Score = 38.7 bits (86), Expect = 0.027
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 194 AGAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRET 352
A F + ++L+WKN + R L T+V +L PVI ++ I R + PT + T
Sbjct: 2 ASLFHQLQILVWKNWLGVKRQPLWTLVLILWPVIIFIILAITRTKFPPTAKPT 54
>AC072062-1|AAY24276.1| 2413|Homo sapiens unknown protein.
Length = 2413
Score = 38.7 bits (86), Expect = 0.027
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 194 AGAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRET 352
A F + ++L+WKN + R L T+V +L PVI ++ I R + PT + T
Sbjct: 2 ASLFHQLQILVWKNWLGVKRQPLWTLVLILWPVIIFIILAITRTKFPPTAKPT 54
>AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein
protein.
Length = 1708
Score = 38.7 bits (86), Expect = 0.027
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 179 PQRKEAGAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTN 343
P K + LL+WKN Q R L TV+EL LP++ +++ LR +++ N
Sbjct: 58 PFSKTMAVLRQLALLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSEN 112
>AF328787-1|AAK00959.1| 2146|Homo sapiens ABC transporter member 7
protein.
Length = 2146
Score = 37.9 bits (84), Expect = 0.046
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 203 FTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYPE---IS 373
+T+ LL+WKN + + R +Q +VELL P+ +++ +R P +P S
Sbjct: 4 WTQLMLLLWKNFMYRRRQPVQLLVELLWPLFLFFILVAVRHSHPPLEHHECHFPNKPLPS 63
Query: 374 SHSLQYSSMIIAGLNTT 424
+ ++ + +I +N T
Sbjct: 64 AGTVPWLQGLICNVNNT 80
>AF311102-1|AAN04657.1| 2146|Homo sapiens ABC transporter ABCA7
protein.
Length = 2146
Score = 37.9 bits (84), Expect = 0.046
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 203 FTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYPE---IS 373
+T+ LL+WKN + + R +Q +VELL P+ +++ +R P +P S
Sbjct: 4 WTQLMLLLWKNFMYRRRQPVQLLVELLWPLFLFFILVAVRHSHPPLEHHECHFPNKPLPS 63
Query: 374 SHSLQYSSMIIAGLNTT 424
+ ++ + +I +N T
Sbjct: 64 AGTVPWLQGLICNVNNT 80
>AF250238-1|AAF85794.1| 2146|Homo sapiens macrophage ABC transporter
protein.
Length = 2146
Score = 37.9 bits (84), Expect = 0.046
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 203 FTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYPE---IS 373
+T+ LL+WKN + + R +Q +VELL P+ +++ +R P +P S
Sbjct: 4 WTQLMLLLWKNFMYRRRQPVQLLVELLWPLFLFFILVAVRHSHPPLEHHECHFPNKPLPS 63
Query: 374 SHSLQYSSMIIAGLNTT 424
+ ++ + +I +N T
Sbjct: 64 AGTVPWLQGLICNVNNT 80
>X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein.
Length = 1704
Score = 36.7 bits (81), Expect = 0.11
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 218 LLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTN 343
LL+WKN Q R L TV+EL LP++ +++ LR +++ N
Sbjct: 9 LLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSEN 50
>DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), member 3 protein.
Length = 1704
Score = 36.7 bits (81), Expect = 0.11
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 218 LLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTN 343
LL+WKN Q R L TV+EL LP++ +++ LR +++ N
Sbjct: 9 LLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSEN 50
>BC062779-1|AAH62779.1| 209|Homo sapiens ABCA3 protein protein.
Length = 209
Score = 36.7 bits (81), Expect = 0.11
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 218 LLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTN 343
LL+WKN Q R L TV+EL LP++ +++ LR +++ N
Sbjct: 9 LLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSEN 50
>BC020724-1|AAH20724.1| 209|Homo sapiens ABCA3 protein protein.
Length = 209
Score = 36.7 bits (81), Expect = 0.11
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 218 LLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTN 343
LL+WKN Q R L TV+EL LP++ +++ LR +++ N
Sbjct: 9 LLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSEN 50
>AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane
specific ATP-binding cassette protein protein.
Length = 1704
Score = 36.7 bits (81), Expect = 0.11
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 218 LLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTN 343
LL+WKN Q R L TV+EL LP++ +++ LR +++ N
Sbjct: 9 LLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSEN 50
>U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein.
Length = 1704
Score = 36.3 bits (80), Expect = 0.14
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 218 LLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTN 343
LL+WKN Q R L TV+EL LP++ +++ LR +++ N
Sbjct: 9 LLLWKNYTLQKRKVLVTVLELFLPLLFPGILIWLRLKIQSEN 50
>AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein.
Length = 5058
Score = 34.3 bits (75), Expect = 0.57
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRE 349
+F+ L+WKN + + R+ + + E P I ++ +LR+Q P R+
Sbjct: 7 QFKALLWKNWLCRLRNPVLFLAEFFWPCILFVILTVLRFQEPPRYRD 53
>AK126220-1|BAC86492.1| 122|Homo sapiens protein.
Length = 122
Score = 34.3 bits (75), Expect = 0.57
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRE 349
+F+ L+WKN + + R+ + + E P I ++ +LR+Q P R+
Sbjct: 7 QFKALLWKNWLCRLRNPVLFLAEFFWPCILFVILTVLRFQEPPRYRD 53
>BC142693-1|AAI42694.1| 272|Homo sapiens Unknown (protein for
MGC:165011) protein.
Length = 272
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>BC141816-1|AAI41817.1| 272|Homo sapiens Unknown (protein for
MGC:164864) protein.
Length = 272
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AL359846-6|CAH73579.1| 2261|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberisiae) protein.
Length = 2261
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AL353685-3|CAH72444.1| 2261|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberog, Drosophila) protein.
Length = 2261
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AL353685-2|CAH72443.1| 363|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberog, Drosophila) protein.
Length = 363
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AK024328-1|BAB14887.1| 363|Homo sapiens protein ( Homo sapiens
cDNA FLJ14266 fis, clone PLACE1002437, highly similar to
ATP-BINDING CASSETTE TRANSPORTER 1. ).
Length = 363
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AF287262-1|AAK43526.1| 2261|Homo sapiens ATP-binding cassette 1
sub-family A member 1 protein.
Length = 2261
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AF285167-1|AAF98175.1| 2261|Homo sapiens ATP-binding cassette
transporter 1 protein.
Length = 2261
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AF275948-1|AAF86276.1| 2261|Homo sapiens ABCA1 protein.
Length = 2261
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AF258627-1|AAF69513.1| 100|Homo sapiens ATP binding cassette
transporter 1 protein.
Length = 100
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AF258626-1|AAF69516.1| 100|Homo sapiens ATP binding cassette
transporter 1 protein.
Length = 100
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AB055982-1|BAB63210.1| 2261|Homo sapiens ABCA1 protein.
Length = 2261
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>AB037924-1|BAB07875.1| 70|Homo sapiens ABC1 protein.
Length = 70
Score = 33.9 bits (74), Expect = 0.76
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 KFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRWQVEPTNRETIRYP 364
+ RLL+WKNL + R Q ++E+ P+ +++ +R P + +P
Sbjct: 6 QLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFP 57
>Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.
Length = 2273
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 197 GAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRW 325
G + +LL+WKN + R +++ VVEL+ P ++L L+L W
Sbjct: 2 GFVRQIQLLLWKNWTLRKRQKIRFVVELVWP---LSLFLVLIW 41
>U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 197 GAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRW 325
G + +LL+WKN + R +++ VVEL+ P ++L L+L W
Sbjct: 2 GFVRQIQLLLWKNWTLRKRQKIRFVVELVWP---LSLFLVLIW 41
>AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter
protein.
Length = 2273
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 197 GAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRW 325
G + +LL+WKN + R +++ VVEL+ P ++L L+L W
Sbjct: 2 GFVRQIQLLLWKNWTLRKRQKIRFVVELVWP---LSLFLVLIW 41
>AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 197 GAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRW 325
G + +LL+WKN + R +++ VVEL+ P ++L L+L W
Sbjct: 2 GFVRQIQLLLWKNWTLRKRQKIRFVVELVWP---LSLFLVLIW 41
>AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein
protein.
Length = 2303
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 197 GAFTKFRLLIWKNLIQQWRHRLQTVVELLLPVITMTLILILRW 325
G + +LL+WKN + R +++ VVEL+ P ++L L+L W
Sbjct: 32 GFVRQIQLLLWKNWTLRKRQKIRFVVELVWP---LSLFLVLIW 71
>AJ131244-1|CAA10334.1| 1078|Homo sapiens Sec24A protein protein.
Length = 1078
Score = 31.9 bits (69), Expect = 3.1
Identities = 17/84 (20%), Positives = 33/84 (39%)
Frame = +2
Query: 326 QVEPTNRETIRYPEISSHSLQYSSMIIAGLNTTRMSIAYSPTSPELEDVVRSSVAXXXXX 505
++ P++ + + +S S Y +G R +A +P +P L +
Sbjct: 41 RILPSSNTSKDFDPVSGQS-NYGGSQGSGQTLNRPPVASNPVTPSLHSGPAPRMPLPASQ 99
Query: 506 XXXXXXXDTETIMPEVELPPDINW 577
+ + +PE LPP +NW
Sbjct: 100 NPATTPMPSSSFLPEANLPPPLNW 123
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,994,098
Number of Sequences: 237096
Number of extensions: 2284854
Number of successful extensions: 3561
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3561
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -