Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E05
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 352 VDSVLDVVRKESESCDCLQG 411
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 110 PPVPPMGPLTCSWSASMYTTMK 175
           PP PP+  +T +   S YT +K
Sbjct: 180 PPEPPVPTVTSACVGSAYTPLK 201


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 45  CWSPVLXLSSWALISVLARHRPHRCLPWGL*LAVGAHQCI 164
           CW+P   +S W  I   + ++  + +  GL L    + C+
Sbjct: 272 CWTPYYVMSLWYWIDRNSAYKIDQRIQKGLFLFACTNSCM 311


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 598 FQXAGELRESHCM 560
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 498 QNHEHILSSPLAQSIRHCRRTIQCDSLSSP 587
           Q H+ +++SPL+Q  +   +     +L SP
Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAASANLPSP 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,666
Number of Sequences: 438
Number of extensions: 3395
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)