Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E03
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 146 5e-36
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 28 2.1
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 2.7
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 6.3
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 6.3
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 8.3
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 26 8.3
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 8.3
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 146 bits (353), Expect = 5e-36
Identities = 68/191 (35%), Positives = 117/191 (61%), Gaps = 6/191 (3%)
Frame = +2
Query: 266 RLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNYRKHTKSQFARDDPAFLVLLSIWLFLSS 445
RL K +QMDFE A W M LF AP++V+R+ RK +++ R+D +F+VL S + +S+
Sbjct: 10 RLLKLSQMDFERAWWDMANLFRAPRRVYRSITLRKQNINRYGREDFSFIVLFSCMIVISA 69
Query: 446 ICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLSNKHLRRDPE------GPDV 607
+ + L T + F++FVDF G++++T++++++ + L + + +
Sbjct: 70 LLWALFYMNTPKGYVTTITFMLFVDFGAVGVIMATMYYFIAKRFLMKSNDTILSSTDYQL 129
Query: 608 EWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISFL 787
EW Y FDVH N+FFP LL+ Q+ L ++++ F+S + NT +L ++ YY Y++F+
Sbjct: 130 EWNYCFDVHCNSFFPSFVLLYVIQLFLL-PVITRDNFISLFMGNTLYLVALCYYSYLTFI 188
Query: 788 GYSNLPFLQNT 820
GY LPFL+NT
Sbjct: 189 GYQILPFLKNT 199
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 521 FIGAGILVSTLFWYLSNKHLRRDPEGPDVEWGYAFDVH--INAFFPPLSLL 667
++ + VST +LS +RDP+ + + +++H +N F P +SLL
Sbjct: 557 YVVGNVSVSTKKEHLSYDGRKRDPQYSNADGSCLWEIHPFLNHFHPTVSLL 607
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 410 LVLLSIWLFLSSICFGLALDLT 475
LV +S WLF S+ICFG++L L+
Sbjct: 44 LVSMS-WLFRSTICFGVSLFLS 64
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 446 ICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLS 568
+CF L++ + + ++ + F F+GA + V+T FW+ S
Sbjct: 247 LCFAAPLNILLNYLLVWHPTIGF-GFLGAPVAVATTFWFQS 286
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 632 HINAFFPPLSLLHCFQIVLFNSILSQAGFVSC--LVSNTFWLASIIYYMYISF 784
++ F PL++L + +V +I GF+ V+ TFW SI +YI F
Sbjct: 245 YVLCFAAPLNILLNYLLVWHPTI--GFGFLGAPVAVATTFWFQSICLILYICF 295
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = -3
Query: 567 LRYQNNVETSIPAPMKXXXXXXXXXXXTLPTVRSSANPKHIDDKNNQMLSNTKN 406
L ++ N PAP +P + SA KH N++L+NT N
Sbjct: 368 LNFRGNRYVEFPAPYDDYTTNQILLEDYMPGIPLSAFLKHKSGPFNKLLANTGN 421
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 702 CLKRASSRVWSQTRSGSPRSYTTCTFPSWDTA 797
C + AS+R+WS + +Y T P WD A
Sbjct: 397 CSEDASARLWSVDTKTALVAYKGHTGPVWDVA 428
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 161 PNLHNYPRSTSPLPAPANYQPTTASASVKRYK 256
P+ NYP S+ P+P Y ++ S RY+
Sbjct: 309 PHSSNYPSSSRRKPSPDRYSNYSSRGSGGRYR 340
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +2
Query: 491 LFMLFVVFVDFIGAGILVSTLFWYLSNKHLRRDPEGPDVEWGYAFDVH 634
+++ FVD +G L F + L + G + W Y F +H
Sbjct: 289 MYLTHHYFVDLVGGMCLAIICFVFAQKLRLPQLQTGKILRWEYEFVIH 336
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 137 MKYSTSPTPNLHNYPRSTSP 196
MKY TP YPRST P
Sbjct: 426 MKYLQIDTPESKEYPRSTRP 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,441,616
Number of Sequences: 5004
Number of extensions: 71989
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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