Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E03
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0592 + 26477974-26479311 31 0.94
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 31 1.2
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509... 31 1.6
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 30 2.9
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 29 5.0
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 29 6.6
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 6.6
04_01_0512 + 6686389-6686395,6686648-6686886 29 6.6
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 29 6.6
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 29 6.6
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 28 8.7
08_02_0555 + 18574934-18575271,18575726-18576095,18576864-18576959 28 8.7
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 28 8.7
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 28 8.7
04_03_0513 - 16681227-16683936,16685572-16685966 28 8.7
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965... 28 8.7
>04_04_0592 + 26477974-26479311
Length = 445
Score = 31.5 bits (68), Expect = 0.94
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 155 PTPNLHNYPRSTSPLP---APANYQPTTASASVKRYK-YLKRLFKFNQMDFEFAAWQMVY 322
PTP P T PLP PA+ + AS KR K LK L + FAA +
Sbjct: 89 PTPTTTTTPTPTPPLPPPAPPASPAKSNKKASAKRNKSLLKLLLRETPRTRRFAA-RAGE 147
Query: 323 LFIAPQKVFRNF 358
LF +P+ R F
Sbjct: 148 LFASPRPCTRRF 159
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 889 VPAGQQGGQVDHE*RGQRQQEHPRVLQERQVAVSQEGNV 773
+P Q G +VDH Q QQ+ ++ Q++QV SQ+ +V
Sbjct: 473 LPNLQVGSKVDHPVMSQHQQQPHQLSQQQQVQPSQQSSV 511
>02_04_0260 -
21350060-21350269,21350544-21350604,21350834-21350901,
21351274-21351483,21351684-21351724,21351923-21351972,
21352084-21352172,21352265-21352339,21352539-21352656,
21352689-21352771,21352854-21352970,21353857-21354074,
21354184-21354241,21354356-21354508
Length = 516
Score = 30.7 bits (66), Expect = 1.6
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Frame = +2
Query: 356 FNYRKHTKSQFARDDPAFLVLLSIWLFLSSICFGLALDLTVGKVALFMLFVVFVDFIGAG 535
FN+ K+ + DD +V +S +L+ I F L L++ V +++ V FV + G
Sbjct: 283 FNFYKYM-IRALEDDFKKVVGISWYLWAMLIIF-LLLNVQGWYVYIWISAVPFVMLLVVG 340
Query: 536 I----LVSTLFWYLSNKHLRRDPE---GPDVEWGYAFDVHINAFFPPLSLL-HCFQIVLF 691
+++ L ++ KH + E P E + I + L + F+I F
Sbjct: 341 TKLEHIITELAHQVAEKHTAIEGELVVSPSDELFWFHRPKIVLLLIHIVLFQNAFEIAFF 400
Query: 692 NSILSQAGFVSCLVSNTFWLASIIYYMYISFL--GYSNLP 805
+L GF SC++ N ++ + + IS L GYS LP
Sbjct: 401 FWLLVTYGFKSCIMGNKGYVIARLVISVISQLLCGYSTLP 440
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 155 PTPNLHNYPRSTSPLPAPANYQPTTASASV 244
P+P + P STSP P PA +P+ ASV
Sbjct: 41 PSPPRASIPVSTSPAPLPAPAKPSLPGASV 70
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 844 GQRQQEHPRVLQERQVAVSQEGNVHVVYDRGEP 746
GQ +EH +++QE Q+ VSQ GN ++ G P
Sbjct: 1557 GQNMEEHRQMMQEFQMQVSQ-GNNQSIHFSGTP 1588
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 802 AVPAKHEGVPAAAARAIRGLPGXPA 876
A A+ EG P AAA +++G P PA
Sbjct: 90 AATAQREGAPPAAATSVQGAPRAPA 114
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 790 IQQPAVPAKHEGVPAAAARAIRGLPGXPA 876
I +P PA G+P+A ARA LP P+
Sbjct: 791 ISEPTAPAAAIGMPSATARAASCLPTEPS 819
>04_01_0512 + 6686389-6686395,6686648-6686886
Length = 81
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +1
Query: 757 DHILHVHFLPGIQQPAVPAK---HEGVPAAAA 843
DH L V F P QP+VPA EG P AAA
Sbjct: 24 DHNLEVSFDPTQTQPSVPAMGGVEEGEPVAAA 55
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 777 FPSWDTATCRSCKTRGCSCCRC 842
FPSW + C GC CC C
Sbjct: 259 FPSWPSDCCCHHGHGGCHCCSC 280
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 524 IGAGILVSTLFWYLSNKHLRRDPEGPDVEWGYAFDVHINAFF 649
+G +L+S +FW R EGPD G FD I A F
Sbjct: 66 LGVAVLLSAVFWLPPFARRGRGSEGPDP--GAGFDADIVASF 105
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 644 FFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISFLGYS 796
++ L H + ++ N+ +A + SC +T W + Y + +F+GYS
Sbjct: 163 YYEYTGLWHIYGLLAMNAWFWRAIYHSC---DTVWTEKLYYSSFAAFIGYS 210
>08_02_0555 + 18574934-18575271,18575726-18576095,18576864-18576959
Length = 267
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 744 SGSPRSYTTCTFPSWDTATCRSCKTRG 824
+GSPR T TFPSW + K +G
Sbjct: 231 AGSPRGCCTSTFPSWLKPSINGHKAQG 257
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 252 INTSRDCSNLIKWISNSPLGKWFTC 326
I +++DC N KW S SP KW C
Sbjct: 756 IGSNQDCGNNWKWPSGSP-QKWVLC 779
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 690 KSTIWKQCSS---ESGGKNALMCTSKA*PHSTSGPSGSRR 580
+++ W CS E+GG N + T +A ++SGPS +
Sbjct: 2591 RASEWSGCSDDEQETGGSNVVQSTKEAPAAASSGPSSKNK 2630
>04_03_0513 - 16681227-16683936,16685572-16685966
Length = 1034
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 672 ASKSYSSTVYCLK-RASSRVWSQTRSGSPRSYTTCTFPSWDTATCRSCKTRGCSC 833
+S + YC +AS+ + + RS SP + + CT SW T C G +C
Sbjct: 38 SSNQTAKVPYCQPDQASALLRLRRRSFSPTNDSACTLASWRPGT-DCCDWEGVAC 91
>01_06_0205 -
27495030-27495128,27495397-27496265,27496352-27496511,
27497136-27497208,27497311-27497430,27498454-27498618,
27498695-27498785,27499381-27499465,27499555-27499740,
27499843-27499899,27499998-27500282
Length = 729
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/83 (28%), Positives = 34/83 (40%)
Frame = +2
Query: 146 STSPTPNLHNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAAWQMVYL 325
+ SP P LHN +TS L A+ A S+ Y RL +Q +F W+ +
Sbjct: 253 NASPFPALHNQISNTSSLSEVAH---AVAVKSIFHIYYNPRL---SQSEFIIPYWKFMRS 306
Query: 326 FIAPQKVFRNFNYRKHTKSQFAR 394
F P V F R ++ R
Sbjct: 307 FSQPFSVGMRFKLRYESEDASER 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,852
Number of Sequences: 37544
Number of extensions: 475095
Number of successful extensions: 1639
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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