Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E03
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 464 LDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLSNKH 577
           L  T   + L+M+ V+      A I + T+FW+L+ ++
Sbjct: 305 LTATAQMLGLYMVTVILGLLFHALITLPTIFWFLTRQN 342


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 543 SPHYFGT*ATSTCAATPRVRTWSGAT 620
           SP Y    ATS+ + +PR  + + AT
Sbjct: 826 SPRYLSAAATSSTSTSPRPASSTAAT 851


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 612 HSTSGPSGSRRRCLLLRYQNNVET 541
           H + G  G +RR +LLR  +++++
Sbjct: 60  HESDGRVGGKRRNILLRRTDSMDS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,695
Number of Sequences: 438
Number of extensions: 5241
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)