Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E02
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    69   2e-13
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    67   7e-13
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   1.5  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   4.6  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   4.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   4.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   6.1  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    24   8.0  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 68.9 bits (161), Expect = 2e-13
 Identities = 32/70 (45%), Positives = 49/70 (70%)
 Frame = +2

Query: 2   KLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQ 181
           K  +  +FDK   + + KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V Q
Sbjct: 15  KAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQ 74

Query: 182 HHGQVIYTRA 211
           H  Q IYTRA
Sbjct: 75  HSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 67.3 bits (157), Expect = 7e-13
 Identities = 31/69 (44%), Positives = 48/69 (69%)
 Frame = +2

Query: 2   KLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQ 181
           K  +  +FDK   + + KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V Q
Sbjct: 15  KAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQ 74

Query: 182 HHGQVIYTR 208
           H  Q IYTR
Sbjct: 75  HSKQAIYTR 83


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 184 MLDYLFDETFFPKLDECSSR 125
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 243 IVYATGSSPLVARV*ITCP*CWTTCLMRP 157
           I+Y T ++P++  + +T   CW   L  P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 95  SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 202
           +ERL +  ++ R AL+EL++  LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 147  SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNT 16
            S+ S  L+ EP+TF+ S T +  IS     SL       LS++T
Sbjct: 946  SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSST 989


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 101  RLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 226
            R   RG++  R +I  +EK  +++VV   G+   TR TK  D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 2   KLNNQVLFDKPTYEXLYKEVPQYKLITPAVV 94
           KLN     +K   E   + +P+ KL+TPA++
Sbjct: 237 KLNKSEKTNKYHTEWNLEHIPRLKLVTPALM 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,045,067
Number of Sequences: 5004
Number of extensions: 17222
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)