Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E02
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              125   1e-29

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  125 bits (301), Expect = 1e-29
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +2

Query: 2   KLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQ 181
           KLNN VLFDK TY+ LYKEVP Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK+V +
Sbjct: 40  KLNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSK 99

Query: 182 HHGQVIYTRATKGDD 226
           HH Q+IYTRATKG D
Sbjct: 100 HHSQLIYTRATKGAD 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,176,917
Number of Sequences: 59808
Number of extensions: 142974
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)