Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_E02
         (356 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   111   1e-25
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    28   1.7  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    28   1.7  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   2.9  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical...    26   6.7  
Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  111 bits (267), Expect = 1e-25
 Identities = 54/77 (70%), Positives = 62/77 (80%)
 Frame = +2

Query: 2   KLNNQVLFDKPTYEXLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQ 181
           KLNN VLFD+ TY+ LYKEV  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV 
Sbjct: 39  KLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVH 98

Query: 182 HHGQVIYTRATKGDDPV 232
           HHGQV+YTRATK  D +
Sbjct: 99  HHGQVVYTRATKEADVI 115


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 153 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNT 16
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 153 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNT 16
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 144 SMSALLAREPRTFNLSDTTAGVISLYCG 61
           S++  ++ E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 104 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 208
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical
           protein Y57A10A.28 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 183 CWTTCLMRPFSLSSMSALLAREP 115
           CW +C++  F+ S +S  L  EP
Sbjct: 62  CWLSCMLMSFAGSFLSCFLLGEP 84


>Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical
           protein ZK678.4 protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 35  TYEXLYKEVPQYKLITP-AVVSERLKVRGSLARRALIELRE 154
           TYE + K   ++K ITP AV  +   +    ARR LI +R+
Sbjct: 184 TYEMIKKVFSKHKTITPFAVPLQNTTLSKLQARRDLIMMRQ 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,888,323
Number of Sequences: 27780
Number of extensions: 105783
Number of successful extensions: 221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)