Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_E01
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 98 9e-22
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 40 4e-04
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 28 1.1
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 27 2.5
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.3
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 4.4
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 5.8
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 5.8
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 7.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.7
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 98.3 bits (234), Expect = 9e-22
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Frame = +1
Query: 250 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 426
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 427 MHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTL 585
M Y IMFGPD CG + VH IF +K + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 586 IVKPDNTYEVLIDNEKVESGDLXADWDFLPP 678
IVKPD T+EV I+ + V G L +DF+PP
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSLF--YDFIPP 235
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 39.5 bits (88), Expect = 4e-04
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 5/179 (2%)
Frame = +1
Query: 154 SWXSNWVYSEHPGKAFGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL-SRKFKPFSNEGK 330
+W S W K G + L S D+ GL T + + + L S P + +
Sbjct: 44 TWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILISNLENPTTRQSS 100
Query: 331 --PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVI 504
P+V+ F VK + CG Y+ + + K++ E P I FG CG I
Sbjct: 101 SVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSI 159
Query: 505 FSYKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWDFLP 675
SY GK HL + T +YTL+++ + T + D V +GD+ ++ P
Sbjct: 160 ISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTGDVGTNFFHSP 217
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 243 WVAEELSSSQFKLSKCFXWVLTVHPIAXPRSXRKLR 136
WV + +++ SKCF +V +H + P+ K R
Sbjct: 38 WVQLQEEAARTPFSKCFFFVADLHALTVPQDPLKFR 73
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 330 FTLITERFELTGESIEPRIFRGFQTFVI-LWVAEELSSSQFKLS 202
F E FELTG + IF+ FQ+ ++ L A+ SS F L+
Sbjct: 77 FMSFLENFELTGRPVVGTIFKYFQSNLLDLAKADLAMSSMFLLA 120
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 379 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 546
G +LKV + E M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 547 R--CKDDVYTH 573
CK+D + +
Sbjct: 674 LLFCKEDEFLY 684
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 391 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 570
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 571 HLYTLIVKP 597
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 508 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES 642
S + K H KK +D Y+H+Y + P + + + ++ ES
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPES 181
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 284 NLASSEVFKPLSSSGSLKNFPAVNLNFPNAXP 189
N +E F+P + SL N P +N ++ + P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -3
Query: 432 VHVLLLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 268
V++ LL L ++ T + + +FDS+ + +R G++ E RI+R
Sbjct: 805 VNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYR 859
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +1
Query: 262 KTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHG 435
KT Y +SRK P L + F K DC G L+V D L+ +G
Sbjct: 952 KTIPRDLLYEVSRKINPLHQASTRLAIAFPDKRLLQYDC--GKLQVLDRLLKDLVSNG 1007
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 220 AGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNE 324
A F S E KGL +SE Y+L P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,205
Number of Sequences: 5004
Number of extensions: 57856
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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