Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_D19
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.87
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 29 1.2
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 6.1
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 26 6.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 8.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 8.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/70 (22%), Positives = 41/70 (58%)
Frame = -3
Query: 545 VPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSK 366
+P + V S S++ +T ++ ++ +++S + +P ++LITA S + + +TS
Sbjct: 699 IPSSSSLVSTYSASLSNITHSSLSLT-AMSSSSAIPTSVNSSTLITASSSNTLLSSITSS 757
Query: 365 TALITLTRIT 336
+A+++ T ++
Sbjct: 758 SAIVSSTTVS 767
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.1 bits (62), Expect = 0.87
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSV--ARVTGTAALISGSVTSIARVP*-KTTEASLITALISA 393
T V P+ + VL S + + V T+ I+ S + P +T + T + S+
Sbjct: 3256 TVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSS 3315
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 3316 SVLNSSTAITSSTALNTSTPITSSSVLNSSTAIT 3349
Score = 28.7 bits (61), Expect = 1.2
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = -3
Query: 566 ITSVGRGVPVETGPVLVVSRSV--ARVTGTAALISGSVTSIARVP*KTTEA-SLITALIS 396
+T++ P+ + VL S + + V T+ I+ S + P ++ A + T + S
Sbjct: 2571 LTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITS 2630
Query: 395 ALV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
+ V +T +TS TAL T T IT + V + T I+
Sbjct: 2631 SSVLNSSTPITSSTALNTSTSITSSSVLNSSTPIT 2665
Score = 27.9 bits (59), Expect = 2.0
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTG---TAALISGSVTSIARVP*KTTEASLITALISA 393
T++ P+ + VL S + T + + S SV + + +T + T + S+
Sbjct: 664 TALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSS 723
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 724 SVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 757
Score = 27.9 bits (59), Expect = 2.0
Identities = 26/88 (29%), Positives = 43/88 (48%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVT 384
T++ P+ + VL S +T + AL + + + + V +T + T L S+
Sbjct: 1852 TALNTSTPITSSSVL---NSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSS--- 1905
Query: 383 TIVTSKTALITLTRITETGVAVT*TGIS 300
T +TS TAL T T IT + V + T I+
Sbjct: 1906 TPITSSTALNTSTPITSSSVLNSSTPIT 1933
Score = 27.9 bits (59), Expect = 2.0
Identities = 26/88 (29%), Positives = 43/88 (48%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVT 384
T++ P+ + VL S +T + AL + + + + V +T + T L S+
Sbjct: 2044 TALNTSTPITSSSVL---NSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSS--- 2097
Query: 383 TIVTSKTALITLTRITETGVAVT*TGIS 300
T +TS TAL T T IT + V + T I+
Sbjct: 2098 TPITSSTALNTSTPITSSSVLNSSTPIT 2125
Score = 27.9 bits (59), Expect = 2.0
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSV--ARVTGTAALISGSVTSIARVP*KTTEA-SLITALISA 393
T V P+ + VL S + + V T+ I+ S + P ++ A + T + S+
Sbjct: 2896 TVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 2955
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 2956 SVLNSSTPITSSTALNTSTSITSSSVLNSSTPIT 2989
Score = 27.5 bits (58), Expect = 2.7
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTG---TAALISGSVTSIARVP*KTTEASLITALISA 393
T V P+ + VL S + T + + S SV + + +T + T + S+
Sbjct: 844 TVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSS 903
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 904 TVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 937
Score = 27.5 bits (58), Expect = 2.7
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTG---TAALISGSVTSIARVP*KTTEASLITALISA 393
T++ P+ + VL S + T + + S SV + + +T + T + S+
Sbjct: 1780 TALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSS 1839
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 1840 TVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1873
Score = 27.5 bits (58), Expect = 2.7
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSV--ARVTGTAALISGSVTSIARVP*KTTEA-SLITALISA 393
T++ P+ + VL S + + V T+ I+ S + P ++ A + T + S+
Sbjct: 1804 TALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 1863
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 1864 SVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1897
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVAR---VTGTAALISGSVTSIARVP*KTTEASLITALISA 393
T V P+ + VL S + + + + S SV + + +T + T + S+
Sbjct: 1516 TVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSS 1575
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 1576 SVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1609
Score = 27.1 bits (57), Expect = 3.5
Identities = 25/88 (28%), Positives = 43/88 (48%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVT 384
T++ P+ + VL S +T ++ L S + + + V +T + T + S+
Sbjct: 3328 TALNTSTPITSSSVL---NSSTAITSSSILNSSTPVTSSSVLNSSTPITSSTVVNSS--- 3381
Query: 383 TIVTSKTALITLTRITETGVAVT*TGIS 300
T +TS TAL T T IT + V + T I+
Sbjct: 3382 TPITSSTALNTSTPITSSSVLNSSTPIT 3409
Score = 26.6 bits (56), Expect = 4.7
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSV--ARVTGTAALISGSVTSIARVP*KTTEASLI---TALI 399
T+V P+ + VL S + + + T+ I+ S + P T +S++ T +
Sbjct: 376 TAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTP--ITSSSILNSSTPIT 433
Query: 398 SALV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
S+ V +T +TS TAL T T IT + V + T I+
Sbjct: 434 SSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 469
Score = 26.6 bits (56), Expect = 4.7
Identities = 25/88 (28%), Positives = 43/88 (48%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVT 384
T++ P+ + VL S +T ++ L S + + + V +T + + L S+
Sbjct: 1912 TALNTSTPITSSSVL---NSSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSS--- 1965
Query: 383 TIVTSKTALITLTRITETGVAVT*TGIS 300
T +TS TAL T T IT + V + T I+
Sbjct: 1966 TPITSSTALNTSTPITSSSVLNSSTPIT 1993
Score = 26.6 bits (56), Expect = 4.7
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSV--ARVTGTAALISGSVTSIARVP*-KTTEASLITALISA 393
T++ P+ + VL S + + V T+ I+ S + P +T + T + S+
Sbjct: 1972 TALNTSTPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTSTPITSS 2031
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 2032 TVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 2065
Score = 26.6 bits (56), Expect = 4.7
Identities = 25/88 (28%), Positives = 43/88 (48%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVT 384
T++ P+ + VL S +T ++ L S + + + V +T + + L S+
Sbjct: 2104 TALNTSTPITSSSVL---NSSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSS--- 2157
Query: 383 TIVTSKTALITLTRITETGVAVT*TGIS 300
T +TS TAL T T IT + V + T I+
Sbjct: 2158 TPITSSTALNTSTPITSSSVLNSSTPIT 2185
Score = 26.6 bits (56), Expect = 4.7
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSV--ARVTGTAALISGSVTSIARVP*-KTTEASLITALISA 393
T + P+ + VL S + + V T+ I+ S + P +T + T + S+
Sbjct: 2236 TVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSS 2295
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 2296 TVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 2329
Score = 26.2 bits (55), Expect = 6.1
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVT---GTAALISGSVTSIARVP*KTTEASLITALISA 393
T V P+ + V+ S + T + + S SV + + +T + T + S+
Sbjct: 2800 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSS 2859
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 2860 SVLNSSTPITSSTALNTSTSITSSSVLNSSTPIT 2893
Score = 25.8 bits (54), Expect = 8.1
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = -3
Query: 542 PVETGPVLVVSRSVARVTG---TAALISGSVTSIARVP*KTTEASLITALISALV---TT 381
P+ + VL S ++ T + + S SV + + +T + T + S+ V +T
Sbjct: 1007 PITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSST 1066
Query: 380 IVTSKTALITLTRITETGVAVT*TGIS 300
+TS TAL T T IT + V + T I+
Sbjct: 1067 PITSSTALNTSTPITSSSVLNSSTPIT 1093
Score = 25.8 bits (54), Expect = 8.1
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVT 384
T++ P+ + VL S +T + L S + + + V +T IT+ +
Sbjct: 1072 TALNTSTPITSSSVL---NSSTPITSSTVLNSSTPITSSSVLNSSTP---ITSSTVVNTS 1125
Query: 383 TIVTSKTALITLTRITETGVAVT*TGIS 300
T +TS TAL T T IT + V + T I+
Sbjct: 1126 TPITSSTALNTSTPITSSSVLNSSTPIT 1153
Score = 25.8 bits (54), Expect = 8.1
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTG---TAALISGSVTSIARVP*KTTEASLITALISA 393
T V P+ + V+ S + T + + S SV + + +T + T + S+
Sbjct: 1732 TVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSS 1791
Query: 392 LV---TTIVTSKTALITLTRITETGVAVT*TGIS 300
V +T +TS TAL T T IT + V + T I+
Sbjct: 1792 SVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1825
Score = 25.8 bits (54), Expect = 8.1
Identities = 25/88 (28%), Positives = 42/88 (47%)
Frame = -3
Query: 563 TSVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVT 384
T V P+ + V+ S +T + AL + + + + V +T + + L S+
Sbjct: 3016 TVVNTSTPITSSTVV---NSSTPITSSTALNTSTPITSSTVLNSSTPITSSSVLNSS--- 3069
Query: 383 TIVTSKTALITLTRITETGVAVT*TGIS 300
T +TS TAL T T IT + V + T I+
Sbjct: 3070 TPITSSTALNTSTPITSSSVLNSSTAIT 3097
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 594 SDNFRVVARSTNEKKKVETVA*VNRNK 674
SD+ V RST+EK+KVE+V V+ +K
Sbjct: 49 SDSKNVDGRSTSEKRKVESVKLVDESK 75
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 519 QYRSSFDRYPATNAGNFFGGYGDGYSDNFR 608
Q S FD+Y + + GY G+SDNFR
Sbjct: 459 QQASDFDQYVS-----LYSGYLQGFSDNFR 483
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -3
Query: 149 TGKGIARSRDDLAEXTRPPSSRTKEDAKXA----LEKDLSTEGTRENFXMS 9
TGK ++ R L + RP +S+ D + + E+DL G ++F S
Sbjct: 7 TGKSSSKGRSRLTQEVRPTASQIIADEEASDLDEYEEDLEGSGNEDDFGPS 57
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 388 TKADIRAVIREASVVFQGTRAMEVTDPDIRAAVPVTRATDLDTTNTGPVSTGTPRPTL 561
T A +I+ S G+ A + T+P + + VT A NT P + P P++
Sbjct: 326 TDASKTKIIQPPSSYGTGSSAGK-TNPPVNPTIKVTAAIPSPLQNTNPAPSTFPNPSV 382
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 8.1
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = -3
Query: 533 TGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSKTALI 354
TG VV ++ VT T I T TE S +T + T T
Sbjct: 821 TGTTTVVIQTPTTVTATETDIVTVTTGYTG-----TETSTVTVTPTGTSTGTTTVVIQTP 875
Query: 353 TLTRITETGVAVT*TGISVTET 288
T TET + TG + TET
Sbjct: 876 TTVTATETDIVTVTTGYTGTET 897
Score = 25.8 bits (54), Expect = 8.1
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = -3
Query: 533 TGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSKTALI 354
TG VV ++ VT T I T TE S +T + T T
Sbjct: 865 TGTTTVVIQTPTTVTATETDIVTVTTGYTG-----TETSTVTVTPTGTSTGTTTVVIQTP 919
Query: 353 TLTRITETGVAVT*TGISVTET 288
T TET + TG + TET
Sbjct: 920 TTVTATETDIVTVTTGYTGTET 941
Score = 25.8 bits (54), Expect = 8.1
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = -3
Query: 533 TGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSKTALI 354
TG VV ++ VT T I T TE S +T + T T
Sbjct: 909 TGTTTVVIQTPTTVTATETDIVTVTTGYTG-----TETSTVTVTPTGTSTGTTTVVIQTP 963
Query: 353 TLTRITETGVAVT*TGISVTET 288
T TET + TG + TET
Sbjct: 964 TTVTATETDIVTVTTGYTGTET 985
Score = 25.8 bits (54), Expect = 8.1
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = -3
Query: 533 TGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSKTALI 354
TG VV ++ VT T I T TE S +T + T T
Sbjct: 953 TGTTTVVIQTPTTVTATETDIVTVTTGYTG-----TETSTVTVTPTGTSTGTTTVVIQTP 1007
Query: 353 TLTRITETGVAVT*TGISVTET 288
T TET + TG + TET
Sbjct: 1008 TTVTATETDIVTVTTGYTGTET 1029
Score = 25.8 bits (54), Expect = 8.1
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = -3
Query: 533 TGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSKTALI 354
TG VV ++ VT T I T TE S +T + T T
Sbjct: 997 TGTTTVVIQTPTTVTATETDIVTVTTGYTG-----TETSTVTVTPTGTSTGTTTVVIQTP 1051
Query: 353 TLTRITETGVAVT*TGISVTET 288
T TET + TG + TET
Sbjct: 1052 TTVTATETDIVTVTTGYTGTET 1073
Score = 25.8 bits (54), Expect = 8.1
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = -3
Query: 533 TGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSKTALI 354
TG VV ++ VT T I T TE S +T + T T
Sbjct: 1041 TGTTTVVIQTPTTVTATETDIVTVTTGYTG-----TETSTVTVTPTGTSTGTTTVVIQTP 1095
Query: 353 TLTRITETGVAVT*TGISVTET 288
T TET + TG + TET
Sbjct: 1096 TTVTATETDIVTVTTGYTGTET 1117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,996
Number of Sequences: 5004
Number of extensions: 36229
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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