Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D19
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        33   1.4  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    33   1.4  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    33   1.4  
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    33   1.4  
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    33   1.4  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     33   1.4  
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              30   9.6  

>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -2

Query: 300 RNRNPSCRSQDNFRNSGNXXXXXXXXXXXXXXXXXXSPALEGRNRPRCAFDRXR-HCEEP 124
           R+R P+ R +   R                           GR+R R    R R H   P
Sbjct: 659 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTP 718

Query: 123 RRFGRXDTAAEQQNKRR 73
           +R GR  +++E++NK R
Sbjct: 719 QRRGRSGSSSERKNKSR 735


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
           subunit SRm300 protein.
          Length = 2296

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -2

Query: 300 RNRNPSCRSQDNFRNSGNXXXXXXXXXXXXXXXXXXSPALEGRNRPRCAFDRXR-HCEEP 124
           R+R P+ R +   R                           GR+R R    R R H   P
Sbjct: 659 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTP 718

Query: 123 RRFGRXDTAAEQQNKRR 73
           +R GR  +++E++NK R
Sbjct: 719 QRRGRSGSSSERKNKSR 735


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
           protein.
          Length = 2752

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -2

Query: 300 RNRNPSCRSQDNFRNSGNXXXXXXXXXXXXXXXXXXSPALEGRNRPRCAFDRXR-HCEEP 124
           R+R P+ R +   R                           GR+R R    R R H   P
Sbjct: 659 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTP 718

Query: 123 RRFGRXDTAAEQQNKRR 73
           +R GR  +++E++NK R
Sbjct: 719 QRRGRSGSSSERKNKSR 735


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -2

Query: 300 RNRNPSCRSQDNFRNSGNXXXXXXXXXXXXXXXXXXSPALEGRNRPRCAFDRXR-HCEEP 124
           R+R P+ R +   R                           GR+R R    R R H   P
Sbjct: 624 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTP 683

Query: 123 RRFGRXDTAAEQQNKRR 73
           +R GR  +++E++NK R
Sbjct: 684 QRRGRSGSSSERKNKSR 700


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -2

Query: 300 RNRNPSCRSQDNFRNSGNXXXXXXXXXXXXXXXXXXSPALEGRNRPRCAFDRXR-HCEEP 124
           R+R P+ R +   R                           GR+R R    R R H   P
Sbjct: 449 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTP 508

Query: 123 RRFGRXDTAAEQQNKRR 73
           +R GR  +++E++NK R
Sbjct: 509 QRRGRSGSSSERKNKSR 525


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -2

Query: 300 RNRNPSCRSQDNFRNSGNXXXXXXXXXXXXXXXXXXSPALEGRNRPRCAFDRXR-HCEEP 124
           R+R P+ R +   R                           GR+R R    R R H   P
Sbjct: 707 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTP 766

Query: 123 RRFGRXDTAAEQQNKRR 73
           +R GR  +++E++NK R
Sbjct: 767 QRRGRSGSSSERKNKSR 783


>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 485 TAALISGSVTSIARVP*KTTEASLITALISALVTTIVTSKTALITLTRITETGVAVT 315
           T +  S   TSI+  P  +T ++  ++ ISA  T+I+++ T   T +  T T  A T
Sbjct: 371 TTSTTSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSPTTSTTSATT 427


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,352,608
Number of Sequences: 237096
Number of extensions: 1358561
Number of successful extensions: 3634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3630
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)