Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D18
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   148   1e-36
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   2.4  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   7.3  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   9.6  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  148 bits (358), Expect = 1e-36
 Identities = 66/84 (78%), Positives = 74/84 (88%)
 Frame = +3

Query: 120 AVIKHADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 299
           AVIK  DMSE  QQ+A+  A QA+EKF IEKDIAAFIK+EFDKK++PTWHCIVGRNFGS+
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61

Query: 300 VTHETRHFIYFYLGQVAILLFKSG 371
           VTHE+RHFIYFYLG VA LLFKSG
Sbjct: 62  VTHESRHFIYFYLGTVAFLLFKSG 85


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 470 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 345
           PQ EP     + Y   N   A  N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 431 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASL 309
           P+DN A+     IE +L+G+T  KE+  H+ ++     ASL
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKILTLTPASL 199


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 23/71 (32%), Positives = 29/71 (40%)
 Frame = +3

Query: 555 ESGCTVFTYTVYLIRNSQCWTLTASYLFT*SQAHAVYVCTVLAIT*GTFDL*TFTSPSVF 734
           ESG  +     +LI N  C     S+L    QA   Y+C  L    G F L      +V 
Sbjct: 122 ESGFCLPDQVYHLIDNHSCIQTAVSHLLRNHQALFKYLCDYLRS--GEFPL------TVL 173

Query: 735 ILKEILVNYYP 767
           I   +L  YYP
Sbjct: 174 IHHVMLYQYYP 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,007
Number of Sequences: 5004
Number of extensions: 56217
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)