Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D18
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0324 - 20946774-20946935,20947301-20947780                       81   8e-16
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           81   8e-16
01_06_0783 + 31975261-31975398,31975583-31975726                       80   2e-15
02_04_0361 - 22359278-22359439,22362291-22362728                       75   5e-14
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     73   2e-13
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989     29   5.8  

>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 81.4 bits (192), Expect = 8e-16
 Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
 Frame = +3

Query: 135 ADMSEXXQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVT 305
           ADMS   Q  A  CA ++   L+KF+  + +A  +KKEFDK Y PTWHCIVG ++GS+VT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVT 183

Query: 306 HETRHFIYFYLGQVAILLFKS 368
           H    F+YF + ++ ++LFK+
Sbjct: 184 HARGCFLYFSMDKIIVMLFKT 204


>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 81.4 bits (192), Expect = 8e-16
 Identities = 36/58 (62%), Positives = 42/58 (72%)
 Frame = +3

Query: 117 KAVIKHADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNF 290
           K  +K ADM E  +Q+A D A  A EK  +EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 46  KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +3

Query: 117 KAVIKHADMSEXXQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIVGRNF 290
           KA+++  DM    Q  A+  A +AL++F++   + IAA IKKEFD  + P W C+VG +F
Sbjct: 5   KAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVVGASF 64

Query: 291 GSYVTHETRHFIYFYLGQVAILLFK 365
           G Y TH    FIYF LG +  L+FK
Sbjct: 65  GCYFTHSKGSFIYFKLGALRFLVFK 89


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
 Frame = +3

Query: 84  KNKPKSKLCXRKAVIKHADMSEXXQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKYN 257
           K K + K+  R   ++ ADM    Q+ AV  A  A+        K +A  +KKEFD  Y 
Sbjct: 97  KGKEERKVSVR---VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYG 153

Query: 258 PTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 368
           P WHCIVG  FGSYVTH    F+YF + +V +LLF++
Sbjct: 154 PAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/68 (51%), Positives = 42/68 (61%)
 Frame = +3

Query: 93  PKSKLCXRKAVIKHADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHC 272
           P   L   K  IK A+M E  +Q+A D    A EK  +EKDI  +IK EFDK + PTWHC
Sbjct: 50  PPPPLAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHC 108

Query: 273 IVGRNFGS 296
           IVG NFG+
Sbjct: 109 IVGHNFGT 116


>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
          Length = 476

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 319 WRVSCVTYEPKLRPTMQCQVGLYFLSNSFLMNAAMSFSMLNFSSA*VAQSTA 164
           WR   +     +R  + C VGL+F   +  ++A + +S L F  A +A +T+
Sbjct: 260 WRELLLRPSAMVRRIVTCVVGLHFFQQASGIDAIVLYSPLVFKKAGMASNTS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,931,597
Number of Sequences: 37544
Number of extensions: 352196
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)