Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D16
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-11|AAK66019.1|  346|Caenorhabditis elegans Proteasome r...   211   3e-55
Z30662-4|CAA83139.3|  376|Caenorhabditis elegans Hypothetical pr...    37   0.018
Z81076-7|CAB03058.1|  411|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z81076-6|CAB03054.1|  387|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z81076-5|CAB03055.1|  389|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U29244-19|AAC71098.1|   95|Caenorhabditis elegans Hypothetical p...    29   4.7  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   6.2  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   6.2  
Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF067211-11|AAK66019.1|  346|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 10 protein.
          Length = 346

 Score =  211 bits (516), Expect = 3e-55
 Identities = 107/188 (56%), Positives = 143/188 (76%), Gaps = 3/188 (1%)
 Frame = +3

Query: 123 SXXLCVDNSXYMXNGXFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN-VEVLATL 299
           S  +CVDNS YM NG F PTRLQ+QQDAVNLV   K R+NPEN VG+L++AN V+VL++L
Sbjct: 5   STMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANSVQVLSSL 64

Query: 300 TSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE-KE 476
           +++ GR+M K H ++P G  N + GI+IAHLALKHRQ +NHKMR+V+F+GSP+   E  E
Sbjct: 65  STEQGRLMMKNHSIEPFGKCNFIAGIKIAHLALKHRQNRNHKMRVVLFIGSPLEEIEMNE 124

Query: 477 LVKLAKRLKKEKVNCDVVSFGE-DSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGGCVV 653
           LVK+AK++KKEKV CDV+ FGE +S+ +   +TFV+TLNGK+ S  GS L+ VP G    
Sbjct: 125 LVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGS--GSSLIVVPQGSS-- 180

Query: 654 LSEALITS 677
           L++AL+ S
Sbjct: 181 LTDALLQS 188


>Z30662-4|CAA83139.3|  376|Caenorhabditis elegans Hypothetical
           protein T16H12.4 protein.
          Length = 376

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
 Frame = +3

Query: 132 LCVDNSXYMXNGXFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VEVLATLTS 305
           + +D S +M +    P+R      A+          NP   +GL+T  +   + L  +T 
Sbjct: 67  IVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKDRKADRLTMMTG 126

Query: 306 DVGRIMSKLHRVQP---NGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT-DEK 473
           ++  +   L+ +      GD +L   +++A   LK   G  H  R VV V S ++T D  
Sbjct: 127 NIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPG--HVSREVVLVISALSTIDPG 184

Query: 474 ELVKLAKRLKKEKVNCDVVSFGED 545
            +    + +K+  + C  +    +
Sbjct: 185 NIYSTIETMKRMNIRCSAIGLSAE 208


>Z81076-7|CAB03058.1|  411|Caenorhabditis elegans Hypothetical
           protein F35C5.6 protein.
          Length = 411

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +3

Query: 270 LANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGK----NHKMRIV 437
           +A++ +L ++      + S L++V  + D  L  GI  A   L+  +      N+K  +V
Sbjct: 117 VADLNLLQSIDDLYQSVFSTLNQVSNSDDSFLAKGIGAAENVLQSGRTNGVRSNYKRLVV 176

Query: 438 VFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSE 551
           V+  +     E + + +A RLK   V    V+F +D +
Sbjct: 177 VYASAYKGEGELDPIPVADRLKSSGVVVSTVAFDQDGD 214


>Z81076-6|CAB03054.1|  387|Caenorhabditis elegans Hypothetical
           protein F35C5.5b protein.
          Length = 387

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
 Frame = +3

Query: 255 VGLLTLANVEVLATLTSDVGR------IMSKLHRVQPNG-----DINLLTGIRIAHLAL- 398
           VGL+T  N E  AT+ +D+ R      + S + ++ PN      D+ L  GI  A   L 
Sbjct: 80  VGLVTY-NTE--ATIQADLNRFQSPDDLFSTVFQILPNDLSTSEDVFLAKGIGAAEQLLA 136

Query: 399 ---KHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSE 551
              K+   KN+K  ++V+  +  +  E++   +A+RLK   V+   V+F +  +
Sbjct: 137 AGRKNNTRKNYKQMVIVYASAYNDEGEEDPRPIAERLKASGVSIATVAFDQTGD 190


>Z81076-5|CAB03055.1|  389|Caenorhabditis elegans Hypothetical
           protein F35C5.5a protein.
          Length = 389

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
 Frame = +3

Query: 255 VGLLTLANVEVLATLTSDVGR------IMSKLHRVQPNG-----DINLLTGIRIAHLAL- 398
           VGL+T  N E  AT+ +D+ R      + S + ++ PN      D+ L  GI  A   L 
Sbjct: 80  VGLVTY-NTE--ATIQADLNRFQSPDDLFSTVFQILPNDLSTSEDVFLAKGIGAAEQLLA 136

Query: 399 ---KHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSE 551
              K+   KN+K  ++V+  +  +  E++   +A+RLK   V+   V+F +  +
Sbjct: 137 AGRKNNTRKNYKQMVIVYASAYNDEGEEDPRPIAERLKASGVSIATVAFDQTGD 190


>U29244-19|AAC71098.1|   95|Caenorhabditis elegans Hypothetical
           protein ZK1248.17 protein.
          Length = 95

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 360 NLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFG 539
           ++ T  RI    LK++     ++ +    G P   + KE V LA       V+CD  +FG
Sbjct: 17  HMTTSTRITSRFLKNKTTNMKRLGVDPPCGVP---EPKEDVLLA-------VSCDAFAFG 66

Query: 540 EDSENNPLLTT-FVNTLNG 593
           +D  NN  +T  + NT +G
Sbjct: 67  QDDTNNDRITVEWTNTPDG 85


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18b protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 474 ELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG 614
           +L +  +R++K  V C   + G+ +     LT    +LNGK T+ GG
Sbjct: 374 KLFESIERIEKGPVVCTDTTHGKPTSLRQALTGAQKSLNGKMTAKGG 420


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18a protein.
          Length = 1456

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 474 ELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG 614
           +L +  +R++K  V C   + G+ +     LT    +LNGK T+ GG
Sbjct: 374 KLFESIERIEKGPVVCTDTTHGKPTSLRQALTGAQKSLNGKMTAKGG 420


>Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical
           protein F55H12.6b protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 300 TSDVGRIMSKLHRVQPNGDIN 362
           T+DV R++ K HR+ P   IN
Sbjct: 107 TNDVNRVLGKRHRISPTPTIN 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,428,143
Number of Sequences: 27780
Number of extensions: 302556
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)