Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D15
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    88   8e-19
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    88   8e-19
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    55   7e-09
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.1  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 87.8 bits (208), Expect = 8e-19
 Identities = 43/91 (47%), Positives = 54/91 (59%)
 Frame = +2

Query: 5   GSKISPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXX 184
           GSK+ PG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  KKG  EE   
Sbjct: 10  GSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAK 69

Query: 185 XXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 277
                       IVGA+L  I  KRN +PEV
Sbjct: 70  KRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 87.8 bits (208), Expect = 8e-19
 Identities = 43/91 (47%), Positives = 54/91 (59%)
 Frame = +2

Query: 5   GSKISPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXX 184
           GSK+ PG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  KKG  EE   
Sbjct: 10  GSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAK 69

Query: 185 XXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 277
                       IVGA+L  I  KRN +PEV
Sbjct: 70  KRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = +2

Query: 14  ISPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 160
           + PGHG   V+ D K F F  SKC     M+RNPRKV WT  YR+   K
Sbjct: 13  VYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGK 61


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 315 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 220
           +  L ACS C + TS       I S S AP++
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPSM 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,478
Number of Sequences: 5004
Number of extensions: 25093
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)