Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_D13
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 142 5e-35
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 93 4e-20
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 64 3e-11
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 44 3e-05
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 34 0.021
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 30 0.34
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 29 0.59
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 28 1.8
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 2.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 27 3.2
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 3.2
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 27 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.3
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 7.3
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 26 7.3
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 142 bits (344), Expect = 5e-35
Identities = 81/181 (44%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Frame = +3
Query: 225 DEDTNEIILVNEETKELDLNHGRIGKIENL--EHLKKLERLYLRWNLIKKIEGLEMLQSL 398
D D + + V ++ ++L RI + +L E K L+ L LR N IKKIE + ++L
Sbjct: 27 DADEDLLDDVPDDVDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVP--ETL 84
Query: 399 VELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNV 578
EL+LYDN IV IENLD++ NL LDLSFN IK I + L ++ LF N+I I+N+
Sbjct: 85 TELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENL 144
Query: 579 NHLPNLELLELGDNRIREIKNLEGLRTLKQLYLGKNKISKIQNLEDLTNLEILVLQANRL 758
L L LELG N+IR I+NL+ L L++L++GKNKI+K +N E L L +L +Q+NR+
Sbjct: 145 EGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRI 204
Query: 759 T 761
T
Sbjct: 205 T 205
Score = 113 bits (271), Expect = 4e-26
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 1/170 (0%)
Frame = +3
Query: 252 VNEETKELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIV 431
V E ELDL I +IENL+++K L L L +N IK I + L+ L L N+I
Sbjct: 80 VPETLTELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIR 139
Query: 432 VIENLDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLEL 611
IENL+ L L L+L N+I+ I L+ L+N++KL++ NKIT+ +N L L LL +
Sbjct: 140 RIENLEGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSI 199
Query: 612 GDNRIREIKNLEGL-RTLKQLYLGKNKISKIQNLEDLTNLEILVLQANRL 758
NRI + +NL L L++LY+ N ++ +E L NLEIL + N +
Sbjct: 200 QSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMI 249
Score = 107 bits (256), Expect = 2e-24
Identities = 72/189 (38%), Positives = 102/189 (53%), Gaps = 27/189 (14%)
Frame = +3
Query: 273 LDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLDS 452
LDL+ I I N+ HLK LE L+ N I++IE LE L L LEL N+I VIENLD+
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENLDT 168
Query: 453 LVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKN------------VNH---- 584
LVNLE L + N+I + EKL + L + SN+IT+ +N V+H
Sbjct: 169 LVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLT 228
Query: 585 -------LPNLELLELGDNRIREIKNLEGLRTLKQLYLGKNKISKIQNLED----LTNLE 731
L NLE+L++ +N I+ + L GL+ L +L+ N++S Q +ED L LE
Sbjct: 229 SFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIEDELSGLKKLE 288
Query: 732 ILVLQANRL 758
+ + N L
Sbjct: 289 TVYFEGNPL 297
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 267 KELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENL 446
+EL ++H + +E L+ LE L + N+IK + L L++LVEL +N++ + +
Sbjct: 218 RELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEI 277
Query: 447 -DSLVNLEILD 476
D L L+ L+
Sbjct: 278 EDELSGLKKLE 288
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 93.1 bits (221), Expect = 4e-20
Identities = 50/166 (30%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Frame = +3
Query: 270 ELDLNHGRIGKIENLEHL-KKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENL 446
+LD++ + + L L +E L L N I + G + ++ +L +N++ + +
Sbjct: 607 QLDISRRHLDSLIGLSELCPSIEELTLEGNEIAYLTGCPV--TIRDLNAVENRLSSLTSF 664
Query: 447 DSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELGDNRI 626
+L+NL+ LD+S+N+++++TGL L+++++L + SN + + + HL L L +NRI
Sbjct: 665 SNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNRI 724
Query: 627 REIK-NLEGLRTLKQLYLGKNKISKIQNLEDLTNLEILVLQANRLT 761
+E+ L L++L LG N+I +I+ + L NL +L L N+LT
Sbjct: 725 KELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLT 770
Score = 71.7 bits (168), Expect = 1e-13
Identities = 43/164 (26%), Positives = 90/164 (54%), Gaps = 1/164 (0%)
Frame = +3
Query: 267 KELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENL 446
++L+ R+ + + +L L+ L + +N ++ + GL L L EL++ N + ++ +
Sbjct: 649 RDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGI 708
Query: 447 DSLVNLEILDLSFNRIKEITGLEKLLN-IKKLFLSSNKITEIKNVNHLPNLELLELGDNR 623
L L L NRIKE++ L+ +++L L +N+I EI+ ++ L NL +L+L +N+
Sbjct: 709 QHLDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNK 768
Query: 624 IREIKNLEGLRTLKQLYLGKNKISKIQNLEDLTNLEILVLQANR 755
+ +K + + L+ L + N I +++ ++ +L L + NR
Sbjct: 769 LTNLKASQPMIHLRILRISNNAIHQLE-VDQFPHLRTLYMDLNR 811
Score = 53.2 bits (122), Expect = 4e-08
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Frame = +3
Query: 273 LDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLDS 452
L +++ I ++E ++ L LY+ N + + L+ LV + Q N
Sbjct: 784 LRISNNAIHQLE-VDQFPHLRTLYMDLNRFNRPPDIRRLKRLVNFS-FRTQDPEASNFVI 841
Query: 453 LVNLEI--LDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKN--VNHLPNLELLELGDN 620
+L+I L LS N + L ++ L L++ ++ E+ +PNL +L+L N
Sbjct: 842 QPSLDIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHN 901
Query: 621 RIREIKNLEGLRTLKQLYLGKNKISKIQNLED----LTNLEILVLQANRL 758
I +I++L+ L+ + +LYL N+I K++NL D L L +L L+ N L
Sbjct: 902 YISDIESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRMNPL 951
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 63.7 bits (148), Expect = 3e-11
Identities = 48/131 (36%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Frame = +3
Query: 258 EETKELDLNHGRIGKI--ENLEHLK-KLERLYLRWNLIKKIEGLEMLQ--SLVELELYDN 422
E LDL+H + ++ E LE ++ ++ RL L N IK I G E+L+ L L + N
Sbjct: 27 ENALTLDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSI-GPEILKFTRLRYLNIRSN 85
Query: 423 QIVVI-ENLDSLVNLEILDLSFNRIKEI-TGLEKLLNIKKLFLSSNKITEIKN-VNHLPN 593
+ E+L L +LEILD+S N+IK++ L+N+K L +S N++ E+ + H+PN
Sbjct: 86 VLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPN 145
Query: 594 LELLELGDNRI 626
LE+L++ +N I
Sbjct: 146 LEILKIENNHI 156
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 43.6 bits (98), Expect = 3e-05
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Frame = +3
Query: 267 KELDL-NHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEML----QSLVELELYDNQIV 431
K LD+ N+ R + + + L++LE L + N I +++ L SL EL + +N++
Sbjct: 456 KRLDISNNLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLF 515
Query: 432 VIENLDS-LVNLEILDLSFNR-------IKEITGLEKLLNIKKLFLS--SNKITEIKNVN 581
+ + LVNL LDLS+N I E++ LE LN LS S+KI + +
Sbjct: 516 FLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLE-TLNFSHNLLSQISSKIGSLVKLK 574
Query: 582 HLPNLELLELGDNRIREIKNLEGLRTLKQLYLGKNKISKIQNLEDLTNLEILVLQANRLT 761
HL L+ +L + +EI L+ L T+ Y N I+ I +L + L + + N L+
Sbjct: 575 HL-YLQFNDLSNRLPQEIGLLKNLETIDLSY---NAITNIASLSECPKLNSINVACNLLS 630
Score = 38.3 bits (85), Expect = 0.001
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Frame = +3
Query: 246 ILVNEETKELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQ 425
+L N ET +DL++ I I +L KL + + NL+ E + ++
Sbjct: 593 LLKNLET--IDLSYNAITNIASLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFC--P 648
Query: 426 IVVIENLDSLVNLEILDLSFNRIKEI--TGLEKLLNIKKLFLSSNKITEIKN-VNHLPNL 596
+ I+ S NL D+S ++ + + +E L+N++ + ++ N T I + ++ + NL
Sbjct: 649 LTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSISDAISAMQNL 708
Query: 597 ELLELGDNRIREIK-NLEGLRTLKQLYLGKNKISKI-QNLEDLTNLEILVLQANRL 758
+ L + + + NL L+ L L L N I + + +++L+++ L +N L
Sbjct: 709 KYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNIL 764
Score = 35.1 bits (77), Expect = 0.012
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Frame = +3
Query: 312 LEHLKKLERLYLRWNLIKKIEG-LEMLQSLVELELYDNQIV--VIENLDSLVNLEILDLS 482
+ L +LE L NL+ +I + L L L L N + + + + L NLE +DLS
Sbjct: 544 ITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLS 603
Query: 483 FNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLEGLRTL 662
+N I I L + + + ++ N ++ + N P+ ++ + I L
Sbjct: 604 YNAITNIASLSECPKLNSINVACNLLSFYEYSN--PSATFIDFSFCPLTTIDPAFSYSNL 661
Query: 663 KQLYLGKNKISKIQN--LEDLTNLEILVLQANRLT 761
+ K+ +++ +E L N+E + + N T
Sbjct: 662 VYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFT 696
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 34.3 bits (75), Expect = 0.021
Identities = 28/92 (30%), Positives = 42/92 (45%)
Frame = +3
Query: 456 VNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREI 635
VN+E + N KE T L+ L +++ N E N++ L LE E DN +E
Sbjct: 25 VNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEPEHHDNSKKES 84
Query: 636 KNLEGLRTLKQLYLGKNKISKIQNLEDLTNLE 731
NL+ L++ N + NL+DL E
Sbjct: 85 TNLDDSNMLEEPKHHDNSNKESTNLDDLNMSE 116
Score = 32.3 bits (70), Expect = 0.084
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +3
Query: 495 KEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLEGLRTLKQLY 674
KE +G +NI++ N E N++ L LE + DN +E NL+ L L++
Sbjct: 16 KEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEPE 75
Query: 675 LGKNKISKIQNLEDLTNLE 731
N + NL+D LE
Sbjct: 76 HHDNSKKESTNLDDSNMLE 94
Score = 31.1 bits (67), Expect = 0.19
Identities = 30/100 (30%), Positives = 44/100 (44%)
Frame = +3
Query: 354 NLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLEKLLNIK 533
+L K+ G ++ E E +DN NLD L LE N KE T L+ L ++
Sbjct: 13 DLNKEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLE 72
Query: 534 KLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLEGL 653
+ N E N++ LE + DN +E NL+ L
Sbjct: 73 EPEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDL 112
Score = 30.7 bits (66), Expect = 0.26
Identities = 32/98 (32%), Positives = 41/98 (41%)
Frame = +3
Query: 228 EDTNEIILVNEETKELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEMLQSLVEL 407
E++ E VN E E N + + NL+ L LE N K+ L+ L L E
Sbjct: 17 EESGESNRVNIEEPEHHDNSNK--ESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEP 74
Query: 408 ELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLEKL 521
E +DN NLD LE N KE T L+ L
Sbjct: 75 EHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDL 112
Score = 29.1 bits (62), Expect = 0.79
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +3
Query: 354 NLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLE--KLLN 527
N K+ L+ L L E + +DN NLD L LE + N KE T L+ +L
Sbjct: 35 NSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEPEHHDNSKKESTNLDDSNMLE 94
Query: 528 IKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLE 647
K +SNK E N++ L E + D+ +E NL+
Sbjct: 95 EPKHHDNSNK--ESTNLDDLNMSEEPKHHDSSNKESTNLD 132
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 30.3 bits (65), Expect = 0.34
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 387 LQSLVELELYDNQIVVIEN-LDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKIT 563
L SL + EL+ + +E+ L+S+ N+E D+ F+R + I L+++ K+ S N +
Sbjct: 819 LASLTKSELFSEECASLEDVLESINNIED-DVGFSREEAIVALKEMDAQNKIMFSDNVVY 877
Query: 564 EI 569
I
Sbjct: 878 RI 879
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 29.5 bits (63), Expect = 0.59
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 321 LKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLV---NLEILDLSFN 488
L L+ L L N + + GLE + SL +L++ DN I + LV N E LS N
Sbjct: 402 LSHLQILVLSRNHLTSLSGLENVPSLEKLDIRDNSITDVVEFRRLVGNTNFEEAYLSLN 460
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 468 ILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVNHLPNLELLELG 614
+L LS N + + + + + KL L + T +KN+ ++ +LE LELG
Sbjct: 623 VLQLSDNEVTDASFISE-----KLKLKYQQFTTLKNLKNIDSLESLELG 666
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 2.4
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Frame = +3
Query: 273 LDLNHGRIGKIENLEHLKKLERL-YLRWNL--------IKKIEGLEMLQSLVELELYDNQ 425
LD++ I I +L+HL+ LE L +LR L I K+ + + SLV+L D
Sbjct: 295 LDISENNIRDIRSLDHLRTLENLKHLRITLSYFNKPTDIAKLLVIARIPSLVKLN--DVN 352
Query: 426 IVVIENLD------SLVNLEILDLSFNRIKEITGLE 515
I E LD S + ++D ++E+T +E
Sbjct: 353 ISPNERLDAELYYTSCIRKLVIDNEIKDVEELTKIE 388
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 252 VNEETKELDLN--HGRIGKIENLEHLKKLERLYLRWNLI 362
+ E+TK + +N H +GKI + E L ++ L L+ NL+
Sbjct: 174 ITEKTKMIVINTPHNPLGKIFSEEELNEIADLVLKHNLL 212
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 528 IKKLFLSSNKITEIKNVNHLPNLELLELGDNRIREIKNLEGLRTLKQLYLGKNKISKIQN 707
+KKLF+ + E +++ NL++ LG N + E N GL L+ L +++
Sbjct: 614 VKKLFIKAKIYFESLSLDERGNLKVPSLGINGL-EYDNWPGLNELEMSQLDIPSQGNLKS 672
Query: 708 LED 716
L D
Sbjct: 673 LHD 675
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 402 ELELYDNQIVVIENLDSLVNLEILDLSFNRIKEITGLEKLLNIKKLFLSSNKITEIKNVN 581
EL+LY +I LD N+E+ D + + +++ GL +LL +FLS + + N+
Sbjct: 195 ELQLYFERITSAL-LDE-TNVELRDAALSSLRDDPGLHQLLPYFIMFLSDSVTRNLGNLV 252
Query: 582 HLPNL 596
L L
Sbjct: 253 VLTTL 257
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 285 HGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEML 389
+G + +EN E + +L RL++ W + ++ E L+ L
Sbjct: 69 YGEVFVLEN-ERISQLHRLFVSWTVSERAEHLKNL 102
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 7.3
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Frame = +3
Query: 228 EDTNEIILVNEETKELDLNHGRIGKIENLEHLKKLERLYLRWNLIKKIEGLEML-QSLVE 404
ED+N + +ETKE D + + K EN E + + L E E QS +
Sbjct: 324 EDSNNSAELAKETKEEDDSENSVDKKENEEDIISSTMMPQDEVLANLTEAYENAPQSTII 383
Query: 405 LELYDNQIVVIENLDSLVNLEILDLS-FNRIKEITG--LEKLLNIKKLFLS 548
E + ++ + + L L R+++ TG L+KL I +L L+
Sbjct: 384 SECLAKYYIHLKEYEYAIGLSKAALEVLKRLQQDTGVKLDKLTRIFQLCLA 434
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 7.3
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 309 NLEHLKKLERLYLRWNLIKKIEGLEMLQSLVELELYDNQIVVIENLDSLVNLEI--LDLS 482
NLE +KKL +R+ + L++ V+LE I I L +N+E+ LD S
Sbjct: 305 NLEGMKKLTEELIRFICLTINGNLQISGQTVDLEKGFEVIEFIPALQKELNVELSPLDNS 364
Query: 483 FNRIKEITGLEKLLNI 530
N K++ + K I
Sbjct: 365 ENCRKQLISIFKRCEI 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,090
Number of Sequences: 5004
Number of extensions: 48771
Number of successful extensions: 152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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