Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_D11
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 320 2e-88
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 63 5e-11
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 30 0.47
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 28 1.9
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.5
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 5.8
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 7.7
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 320 bits (785), Expect = 2e-88
Identities = 154/241 (63%), Positives = 183/241 (75%)
Frame = +1
Query: 121 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 300
L +F +L N S + Y +T NL++ S+TKVI QGFTGKQGTFH+Q A+DYGTKV
Sbjct: 12 LRRFSSSSQLKN----SKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKV 67
Query: 301 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVC 480
VGG +PKKAGT HLGKPVFGT++EA T A AS ++VPPP +PLIV
Sbjct: 68 VGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVA 127
Query: 481 ITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRS 660
ITEG+PQHDM+RV L Q+KSRLVGPNCPGII P +CKIGIMP+ +HK GCIG+VSRS
Sbjct: 128 ITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRS 187
Query: 661 GTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLXVFLKDPXTKGIILIGEIGGNA 840
GTLTYEA +QTT T LGQ+L +GIGGDPF GT+FID L +FL DP T+GIILIGEIGG+A
Sbjct: 188 GTLTYEAVNQTTQTDLGQSLVIGIGGDPFPGTNFIDALKLFLDDPNTQGIILIGEIGGSA 247
Query: 841 E 843
E
Sbjct: 248 E 248
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 62.9 bits (146), Expect = 5e-11
Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Frame = +1
Query: 328 GTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCIT---EGVP 498
GT+ + PV+ T++EA V+ P I CI EGVP
Sbjct: 64 GTKEILLPVYRTIEEA-CTKHPEVDVVVNFASSRSAYASTMELMEFPQIRCIAIIAEGVP 122
Query: 499 QHDMVRVKHALLRQNKSRLV--GPNCPGIIAPEKCKIG--------IMPAAVHKRGCIGV 648
+ R + L+ + +V GP G I P KIG I+ + +++ G +
Sbjct: 123 ER---RAREILVTSKEKNVVIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRPGSVAY 179
Query: 649 VSRSGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLXVFLKDPXTKGIILIGEI 828
VS+SG ++ E + + T G + IGGD + GT FID L F DP K ++L+GE+
Sbjct: 180 VSKSGGMSNELNNIISHTTDGVYEGIAIGGDRYPGTTFIDHLIRFEADPACKLMVLLGEV 239
Query: 829 GGNAE 843
GG E
Sbjct: 240 GGVEE 244
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 29.9 bits (64), Expect = 0.47
Identities = 25/93 (26%), Positives = 41/93 (44%)
Frame = +2
Query: 563 LTVLVSLLPRSVKLVSCQLQCTNVVASELYRVLGH*PMKPVIRLLLLA*AKLCVSVLEGI 742
LT + L R VS C N V S + + ++ LL L + L ++ +G
Sbjct: 102 LTTIAGRLDRFRSTVSVSFDCLNWVNSMIPNLPEKELQYWILELLPLQSSFLSYALRDGK 161
Query: 743 PSMEQTSLTAXKFSSRILXPRASSSLVKLVEML 841
PS+ +++ + + R L + SL KLV L
Sbjct: 162 PSVADSAIKSTRRCYRSLFCKKMDSLKKLVSFL 194
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 600 FTLLGSNDTRTVRTNQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLN 451
+TLL N T +R +QS + G + H W T N N + S N
Sbjct: 186 YTLLLQNTTVVIRRDQSVVYTGDVGTNFFHSPTKWITHSNVSNGYYTSRN 235
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 178 PYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVG-GVSPKKAGTEHLGKPV 354
PY+ R NL +TS F G + H Q+ + ++ + PK+ + KPV
Sbjct: 470 PYSTFRLNLSVTSPYNA---DFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPV 526
Query: 355 FGTVKEAKAG 384
G V++ AG
Sbjct: 527 MGIVQDTLAG 536
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 389 PVPAFASLTVPNTGLPRCSVPAFFGDTPPTTLVP 288
P+P++ + ++PN G+P ++P P T +P
Sbjct: 124 PLPSYNTASLPNAGIP-AAMPGMPSGYPGTVPIP 156
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 67 PFRXFTFNNSTMAMPVRVLSKFKDGLK-LGNVRFASGNPYA 186
PF F N T +PV +S+ +G + N + P+A
Sbjct: 33 PFESSVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,854
Number of Sequences: 5004
Number of extensions: 71537
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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