Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D11
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...   306   1e-83
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985...    56   4e-08
01_07_0231 + 42176598-42178117,42178232-42179753                       32   0.66 
04_04_1339 + 32760424-32760584,32762428-32764462                       30   2.0  
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524...    30   2.7  
08_02_0873 + 22100124-22100810                                         29   3.5  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score =  306 bits (752), Expect = 1e-83
 Identities = 139/214 (64%), Positives = 167/214 (78%)
 Frame = +1

Query: 202 LILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 381
           + +   T+VI QG TGK GTFH++QA++YGT +VGGV+PKK GTEHLG PVF +V EAKA
Sbjct: 37  VFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKA 96

Query: 382 GTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVG 561
            T A ASVIYVPPP             + L+VCITEG+PQHDMV+VK AL +Q+K+RL+G
Sbjct: 97  ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIG 156

Query: 562 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVGIGGD 741
           PNCPGII P +CKIGIMP  +HK G +G+VSRSGTLTYEA  QTT  GLGQ+ CVGIGGD
Sbjct: 157 PNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216

Query: 742 PFNGTDFIDCLXVFLKDPXTKGIILIGEIGGNAE 843
           PFNGT+F+DCL  F+ DP T+GI+LIGEIGG AE
Sbjct: 217 PFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAE 250


>01_02_0089 -
           10997882-10997957,10998139-10998423,10998519-10998589,
           10998685-10998761,10998858-10998963,10999062-10999189,
           10999291-10999423,11000005-11000133,11000220-11000375,
           11000770-11000846,11000938-11000998,11001249-11001383,
           11001642-11001765,11001852-11001917,11002010-11002112,
           11002603-11002652,11003795-11003895
          Length = 625

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
 Frame = +1

Query: 469 LIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIG--------IMPAAV 624
           ++  I EGVP+ D  ++  +  R N   ++GP   G I     KIG        I+   +
Sbjct: 123 VVAIIAEGVPESDTKQLI-SYARANNKVIIGPATVGGIQAGAFKIGDTAGTIDNIIQCKL 181

Query: 625 HKRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLXVFLKDPXTK 804
           ++ G +G VS+SG ++ E  +       G    + IGGD F G+   D +  F   P  K
Sbjct: 182 YRPGSVGFVSKSGGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVK 241

Query: 805 GIILIGEIGGNAE 843
            ++++GE+GG  E
Sbjct: 242 MMVVLGELGGKDE 254


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = +1

Query: 172 GNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKP 351
           G    E     I++S TK      TGK  TF    +L      VGG     +    +G+ 
Sbjct: 672 GTTTPEKELESIVSSSTKSSKLA-TGKMVTFGPGNSLR-SEDFVGGADALLSKATEIGRG 729

Query: 352 VFGTVKEAKAGTGATASV 405
           VFGTV  A  G G   ++
Sbjct: 730 VFGTVYRASVGEGRVVAI 747


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 64  FPFRXFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNL 204
           F  R    N ST  M V +L    DGL  G++  A+G P+A+ ++ L
Sbjct: 550 FGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCL 596


>04_04_0254 -
           23951495-23951902,23952000-23952155,23952344-23952485,
           23952772-23953160,23953833-23953948,23954290-23954371
          Length = 430

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +2

Query: 236 RVSLESRVPSTVNKPLTMVLKLLEECHQRRLVQ 334
           R  +E +VPSTVN  LT VL+    CH RR VQ
Sbjct: 390 RTYIEDKVPSTVN--LT-VLEPCSRCHVRRRVQ 419


>08_02_0873 + 22100124-22100810
          Length = 228

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
 Frame = +1

Query: 550 RLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVV------SRSGTLTYEACHQTTITGLG 711
           R   P+C G + PE C+ G +P  V +R C  +       +R     Y  C +  +    
Sbjct: 77  RCPDPSCGGALDPELCR-GALPGDVFERWCAALCEAMFAGARRTYCPYPGCSEMMVADAD 135

Query: 712 QTLCVGI 732
              C G+
Sbjct: 136 DEGCAGV 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,270,210
Number of Sequences: 37544
Number of extensions: 501031
Number of successful extensions: 1260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)