Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D09
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   27   3.4  

>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 166  VQTTFIHITLFLAILTRQCVYV 101
            VQ T+IH+  +L+ L RQC Y+
Sbjct: 2779 VQITWIHLLGYLSYLRRQCSYI 2800


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 111  HWRVNIAKNSVICMNVVCTYVTHFLINKS 197
            +W + IA  ++IC+NV+C  + H+ + +S
Sbjct: 1289 NWDITIA--AIICINVICMSLEHYKMPQS 1315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,036,732
Number of Sequences: 59808
Number of extensions: 67094
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)