Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D09
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   7.6  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    20   7.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   7.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 141 VICMNVVCTYVTHFLIN 191
           V+C+ + C  VT   +N
Sbjct: 8   VVCLGIACQDVTSAAVN 24


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 141 VICMNVVCTYVTHFLIN 191
           V+C+ + C  VT   +N
Sbjct: 8   VVCLGIACQDVTSAAVN 24


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 VICMNVVCTYVTHFLINKSS 200
           V+C+ + C  +T   + ++S
Sbjct: 8   VVCLGIACQGITSVTVRENS 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,073
Number of Sequences: 438
Number of extensions: 742
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)