Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_D08
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 29 0.68
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 28 1.6
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 28 1.6
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 4.8
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.8
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.3
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 26 6.3
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 26 8.4
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 29.5 bits (63), Expect = 0.68
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 198 SSFEIGEPLYPAHANVPADSSYDFIIVGGGSAGCVLANR 314
+ EI + LY A A+ + YD ++GGG G V A R
Sbjct: 27 AQIEISKRLYSAKAS--GNGEYDLCVIGGGPGGYVAAIR 63
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 246 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEA 356
P +D++++GGGS G A R + V +IEA
Sbjct: 3 PISKVFDYLVIGGGSGGLASARRAAK-HGAKVALIEA 38
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 774 EVLLDTNGQQQLGYSIPAYXIAGQKRQSTAYSFLXPIKIDP 896
+ LL+ +GQQ L YS + + K S ++ F P +++P
Sbjct: 145 QTLLNLDGQQLLSYSENPFYLFEVKNLSISFHFESPQQVEP 185
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 252 DSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGD 362
D YD I++G G CVL+ L V VL I+ D
Sbjct: 2 DEEYDVIVLGTGLTECVLSG-LLSVDGKKVLHIDRND 37
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +3
Query: 543 VRGNRADYDNWAENGNEGWD----WNTVIQYFKKSERLD 647
V GN AD +W +G WD + V+ + KK + LD
Sbjct: 110 VEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKEKSLD 148
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 372 SIANSPGYSLITSTLLPNWGYFG 440
SIANSP SL+T L P + G
Sbjct: 390 SIANSPSVSLLTKVLHPKYHLIG 412
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 670 NPQTYTATKDTSESRDRCGSLSTKVFLTLSKNKVTKCYSTRMD 798
NP+ DT+ S + GS S +T S + V YS +D
Sbjct: 199 NPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYLLYSVHVD 241
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +1
Query: 598 GTGIRSFSTLRKVKDSMTIIS*AVNPQTYTATKDTSESRDRCGSLSTKVFLTLSKNKVTK 777
G RS S L+ K + + S N Y+ ++ +SE R GS+S + +S+ ++
Sbjct: 779 GPNRRSSSVLQSQKSTSSNTSNR-NNGGYSGSRPSSEMGHRYGSMSGRSMRQVSQRSTSR 837
Query: 778 CYSTRMDNNN 807
S N N
Sbjct: 838 ARSPEPTNRN 847
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 633 SERLDD--NHIMSSESADLHGNKGYLGVTRPLWKSFDEGLFDAFK 761
S +L D N ++ +E+ +L G +R ++KS +GL DAF+
Sbjct: 152 SPKLTDLQNQLVRTEAENLVGEMQLDNTSREVFKSSFQGLMDAFQ 196
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 312 RLTEVANWSVLMIEAGDDPPSIANSPGYSLITSTL 416
+L E+ N+ ++E DDPP I +P + TSTL
Sbjct: 794 KLEEIENY---IMENKDDPPEIYAAPVFKNKTSTL 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,848
Number of Sequences: 5004
Number of extensions: 68842
Number of successful extensions: 247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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