Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D08
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   2e-18
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)                 33   0.24 
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               31   1.7  
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)                   30   2.2  
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_51632| Best HMM Match : RasGAP (HMM E-Value=1.3)                    30   2.9  
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_54069| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 29   3.9  
SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)        29   3.9  
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             29   3.9  
SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)           29   5.1  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_12647| Best HMM Match : NNMT_PNMT_TEMT (HMM E-Value=5.3e-10)        29   6.7  
SB_45400| Best HMM Match : MAM (HMM E-Value=0)                         28   8.9  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
 Frame = +3

Query: 255 SSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSPGYSLITSTLLPNWGY 434
           S +D++I G GSAGCVLANRL+   +  VL++EAG    +       +LI +     + +
Sbjct: 162 SEHDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNW 221

Query: 435 FGVNDDFSSQGQKFKSIRHT---RGKMLGGSSSLNSMFYVRGNRADYDNWAENGNEGWDW 605
           +     + +  QK  + R     RG++ GGSSSLN+M Y+RG+  DYD W   G +GW +
Sbjct: 222 Y-----YHTAPQKHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSY 276

Query: 606 NTVIQYFKKSE 638
              + YF+KS+
Sbjct: 277 ADCLPYFRKSQ 287


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 27/56 (48%), Positives = 34/56 (60%)
 Frame = +3

Query: 261 YDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGDDPPSIANSPGYSLITSTLLPNW 428
           YDFII GGG+AGC+LANRLT      VLM+EAG +  S+  S         + P+W
Sbjct: 11  YDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAGFSKLLVNPDW 66


>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
          Length = 1423

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 336  SVLMIEAGDDPPSIANSPGYSLITSTLLPNWGYFGVNDDFSSQGQKFKSIRHTRGKMLG 512
            +VL+ +A   PP  A   GYS  T +LLPN  Y  +ND +  +    K        +LG
Sbjct: 1320 NVLIGQADKIPPVCAVLAGYSRATISLLPNAAY--INDGYDDENNDVKQFGQLLAVLLG 1376


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 249 ADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEA 356
           A  +YD++++GGGS G   A R  E    +V++  A
Sbjct: 47  AVKAYDYVVIGGGSGGIASARRAAEFGVKAVVIEHA 82


>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
          Length = 836

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 234 HANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGD 362
           HAN   +   D I++GGG +G   A  L +      L++EA D
Sbjct: 539 HANHTEELRADIIVIGGGISGLCAAKLLQQGHGVDTLVLEARD 581


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 264  DFIIVGGGSAGCVLANRLTEVANW-SVLMIEAGD 362
            D II+G G +G + AN LTE   +  VL++EA D
Sbjct: 2108 DVIIIGAGVSGLIAANVLTEQDQYIKVLVLEACD 2141


>SB_51632| Best HMM Match : RasGAP (HMM E-Value=1.3)
          Length = 110

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 90  PLGYQRIECSFKR*PCFQVKILIPILEVI 176
           P  Y R+ C ++R  C+ +++LI +  +I
Sbjct: 46  PFSYSRVTCFYERVVCYDLRVLISVFRLI 74


>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 540 YVRGNRADYDNWAENGNEGWDWNTVIQY 623
           YV+ +R  Y  W   GN  WDW    QY
Sbjct: 64  YVQAHRRAYLAWYYYGNGNWDWELDNQY 91


>SB_54069| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 355

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 9   REHGSSNSNFNHINTYLKPNNCSSSNGPLGYQRIECSF 122
           RE   SN+  +H N Y    NC+ + G     R+ C +
Sbjct: 85  REKKRSNARMHHPNNYRDNQNCTVNRGDTEILRLTCGY 122


>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +3

Query: 237 ANVPADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIE 353
           ++VPA++  D +++GGGS G      LT++   +V+++E
Sbjct: 103 SSVPAEA--DVVVIGGGSVGTSTLYHLTKMGVKNVILLE 139


>SB_2721| Best HMM Match : HI0933_like (HMM E-Value=1.10002e-41)
          Length = 264

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 252 DSSYDFIIVGGGSAGCVLANRLTE 323
           +S YD IIVGGG+AG   A  + E
Sbjct: 2   NSKYDIIIVGGGAAGFFTAINIAE 25


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 249 ADSSYDFIIVGGGSAGCVLANRLTEVANW 335
           A   YD I++GGGS G   A       NW
Sbjct: 665 ASYEYDLIVIGGGSGGLACAKNHIGSLNW 693


>SB_22909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 273 IVGGGSAGCVLANRLTEVANWSVLMIE 353
           ++GGG  GC  A +L +  N++V ++E
Sbjct: 21  VIGGGIGGCCSALQLAKTGNYTVFLLE 47


>SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)
          Length = 410

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 255 SSYDFIIVGGGSAGCVLANRLTEVANWSVL 344
           + ++ IIVGGG AG  LA +L +  N +++
Sbjct: 45  NDFNVIIVGGGYAGITLAGKLDDYCNVTLI 74


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 565  TTIGPKTETKAGTGIRSFSTLRKVKDSMTIIS*AVNPQTYTATKDTSESRDRCGSLST 738
            TT+ P++    GT +   ST+ +     T+IS A  P+T  +++ T+E      S ST
Sbjct: 1248 TTVSPESTFTPGTTVSPESTVAQESTIATVISAA--PETTESSESTAEPLTTAASEST 1303


>SB_12647| Best HMM Match : NNMT_PNMT_TEMT (HMM E-Value=5.3e-10)
          Length = 325

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 516 SSSLNSMFYVRGNRADYDNWAENGNEGWDWNTVIQYFKKS--ERLDDNHIMSSE 671
           +  L S  Y   N+     W E   +G+DW   I+Y  K+   + DD  +   E
Sbjct: 76  AKELVSADYTPSNQEAVKLWKEKDPKGFDWRPFIEYVVKNLEGKCDDQEVTQRE 129


>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
          Length = 257

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 507 LGGSSSLNSMFYVRGNRADYDN-WAENGNEGWDW 605
           + G S++ S+     NRA     W++ GN+G DW
Sbjct: 88  MNGGSAVGSLNVYLANRASLSLVWSKTGNQGSDW 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,288,091
Number of Sequences: 59808
Number of extensions: 508507
Number of successful extensions: 1452
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)