Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D07
         (813 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    51   1e-08
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   8.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 36/152 (23%), Positives = 76/152 (50%), Gaps = 11/152 (7%)
 Frame = +3

Query: 174 LSIIHLSNNKLTTINNTVFSHCPKLMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLK 353
           L+ ++ S N +  +    F+   +L +I+L  N + +L+ + F     L +LNL+GN + 
Sbjct: 94  LTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIA 153

Query: 354 VLSAEIFVHTPAMIWLDMSHAELTSLWKVDKN-HPLTVLINLLFLNVSHNRITEI----- 515
            ++ E F + P +  LD+++  ++SL   D N       + +  +N+SHN++  +     
Sbjct: 154 TIAYETFQNLPELEDLDLAYNSISSL---DFNIFDQVGSLGMFHVNMSHNKLINLVVAPS 210

Query: 516 ----KQNELDNLNKLRTLDIT-NNPLACSRDF 596
               +   L  L  ++ LD++ NN  + ++ F
Sbjct: 211 VPFEQDTGLGGLQNIKVLDLSFNNITSVAKQF 242



 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
 Frame = +3

Query: 171 ALSIIHLSNNKLTTINNTVFSHCPKLMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPL 350
           +L  ++L  NK+ TI    F + P+L +++LAYN +++LD  +F +   L   ++  +  
Sbjct: 141 SLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMFHVNMSHN 200

Query: 351 KVLSAEIFVHTP-----------AMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVSH 497
           K+++  +    P            +  LD+S   +TS   V K     V ++L+ L + H
Sbjct: 201 KLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITS---VAKQFFRPVELSLMQLYLGH 257

Query: 498 NRITEIKQNELDNLNKLRTLDITNNPL 578
           N++    ++   N+  L+ LD+++N L
Sbjct: 258 NKLLNATKDLFGNMPHLQVLDLSHNSL 284



 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
 Frame = +3

Query: 255 INLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSA--EIFVHTPAMIWLDMSHAELTS 428
           ++L++N +T++  K F +  EL+ + L     K+L+A  ++F + P +  LD+SH    S
Sbjct: 228 LDLSFNNITSV-AKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSH---NS 283

Query: 429 LWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNNPL 578
           L+++D +        L +L+ SHNRI+EI  +    L  LR +D ++N L
Sbjct: 284 LYELDFD-TFRNTKKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRL 332



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
 Frame = +3

Query: 144 YDNSLKTFSALSIIHLSNNKLTTINNTVFSHCPKLMEINLAYNMLTTLDPK-LFAKNNEL 320
           +   L  F  LS + LS N+L  I+   F   P+L  +NL +N   TL+   L  +  E 
Sbjct: 386 HGGQLARFKCLSWLDLSYNRLGQIDAGTFKGIPRLASLNLGHNSQLTLEINGLSFQGLEY 445

Query: 321 AKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAEL-TSLWKVDKNHPLTVLINLLFLNVSH 497
             L+L  + +  LS    + TP ++ L ++   L T   +V  N     + +L +LN+ +
Sbjct: 446 TLLHLNLDNVS-LSQVPALSTPNLLSLSLAFNSLPTVALEVAGN-----ISSLRYLNLDY 499

Query: 498 NRITEIKQNELDNLNKLRTLDITNNPL 578
           N ++ +      +L +LR L +  NP+
Sbjct: 500 NDLSAV-PIVTHSLTELRHLSLEGNPI 525



 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
 Frame = +3

Query: 150 NSLKTFSALSIIHLSNNKLTTINNTVFSHCPKLMEINLAYNMLTTLDPKLFAK--NNELA 323
           +++K  + L  + LSNN+L  + +  F     L +++L  N +  +    F    + +L 
Sbjct: 36  DAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDLT 95

Query: 324 KLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNR 503
           ++    N ++ +    F     +I L+  H +   +  +++   +  L +L  LN+  N+
Sbjct: 96  EVYFSFNSVRNVQQHTFAD---LIQLEQIHLDDNRIESLERRAFMN-LKSLKRLNLKGNK 151

Query: 504 ITEIKQNELDNLNKLRTLDITNNPLACSRDF 596
           I  I      NL +L  LD+  N ++ S DF
Sbjct: 152 IATIAYETFQNLPELEDLDLAYNSIS-SLDF 181



 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
 Frame = +3

Query: 132 LXXIYDNSLKTFSALSIIHLSNNKLTTINNTVFSH--CPKLMEINLAYNMLTTLDPKLFA 305
           L  + DNS     +L  +HL +N +  I+   F       L E+  ++N +  +    FA
Sbjct: 54  LRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDLTEVYFSFNSVRNVQQHTFA 113

Query: 306 KNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSL-WKVDKNHPLTVLINLLF 482
              +L +++L  N ++ L    F++  ++  L++   ++ ++ ++  +N P      L  
Sbjct: 114 DLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLP-----ELED 168

Query: 483 LNVSHNRITEIKQNELDNLNKL 548
           L++++N I+ +  N  D +  L
Sbjct: 169 LDLAYNSISSLDFNIFDQVGSL 190



 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 3/171 (1%)
 Frame = +3

Query: 18  LXIFKISNNPRLKHLPVXGFTCSSDQFNIYFFGASDCGLXXIYDNSLKTFSALSIIHLSN 197
           L    + +N +L  L + G +    ++ +      +  L  +   +L T + LS+  L+ 
Sbjct: 420 LASLNLGHNSQLT-LEINGLSFQGLEYTLLHLNLDNVSLSQV--PALSTPNLLSL-SLAF 475

Query: 198 NKLTTINNTVFSHCPKLMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLS-AEIF 374
           N L T+   V  +   L  +NL YN L+ + P +     EL  L+L+GNP+  LS   + 
Sbjct: 476 NSLPTVALEVAGNISSLRYLNLDYNDLSAV-PIVTHSLTELRHLSLEGNPITTLSNTSLL 534

Query: 375 VHTPAMIWLDMSHAELTSL--WKVDKNHPLTVLINLLFLNVSHNRITEIKQ 521
                +  L++ + +LT L      K  PL  L   ++ N+ +  I  I Q
Sbjct: 535 GAANQLEELNLKNIDLTVLESGAFCKMQPLRTLKIGVYRNIKNFNIPSILQ 585



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 471 NLLFLNVSH---NRITEIKQNELDNLNKLRTLDITNNPL 578
           +LL L ++H   + +     + +  LN+L  LD++NN L
Sbjct: 16  SLLTLKLTHALSSSVQNFPSDAIKILNRLEELDLSNNRL 54


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 505 ILLWDTFKNSKLIR 464
           I LWD F+N  L R
Sbjct: 396 IKLWDMFQNESLTR 409


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,214
Number of Sequences: 336
Number of extensions: 3764
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)