Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D04
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.55 
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    29   0.72 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.9  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   2.9  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   3.9  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = -1

Query: 501 FAAVGLRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRW---L*RG 331
           FA+ GL+    ++ T KI  YT+  +    AIA       S ++  +  ++ W   L  G
Sbjct: 323 FASSGLKTNISTLNTGKIWGYTIGTI--CVAIASKM---GSSMLAARILKMPWSDSLVVG 377

Query: 330 SFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAF 211
           S  +   +  L  + I +  GI+ ETI + F+F   I  F
Sbjct: 378 SLMSCKGLVELIVLNIGLSTGILNETIFSMFVFMAVITTF 417


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = -1

Query: 336 RGSFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAFNISVAASGHWIPFVQFPA 157
           R + +  +   +  R + +  +   T+T  A F+F    D  N+ V   G    F  FP 
Sbjct: 307 RRNLQRTYGEEISQRPFYKTRICYYTDTADAEFVFDYHPDYENLFVCTGGSGHGFKFFPI 366

Query: 156 LSSRPDGCLF 127
           L     GC+F
Sbjct: 367 LGKYSIGCMF 376


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 3    VHLLCRHGEDFCDLDVLLRLCLHTNTV---PAFWTDKSLPKSVPGTSTRQAYWTMQGTER 173
            VHLL  + E FC++   + L L   T+    A WT K L K      ++ +    + T +
Sbjct: 1027 VHLLIENFEKFCEVPREISLLLDDPTLFYNNAAWTSKELYKRCEEIISQMSL-DERNTPK 1085

Query: 174  KVSSVRKLRQ 203
              +S ++ RQ
Sbjct: 1086 HTASTKRKRQ 1095


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 24  GEDFCDLDVLLRLCLHTNTVPAFWTDKSLPKSV---PGTSTRQAYWTMQGTERKVSSVRK 194
           GED C+L   +R+C    T+P    +     S+   P  +  +   + +GT R  +   K
Sbjct: 159 GEDLCELQDAIRICFSCFTLPQQTMESPFATSMSKAPAKTESRGSNSFEGTSRLANLGAK 218

Query: 195 L 197
           L
Sbjct: 219 L 219


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 640 LCIDGHPRVLYCGGESAFDDLTSTCVSADE---VXACPAE 750
           LC+D H R+++   ++   DL +  V A+    V A P E
Sbjct: 224 LCVDQHGRIVFDSSDTVIKDLENKDVEAESQEAVVAAPIE 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,326,339
Number of Sequences: 5004
Number of extensions: 75527
Number of successful extensions: 227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)