Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_D03
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0783 + 31975261-31975398,31975583-31975726                       80   2e-15
02_04_0361 - 22359278-22359439,22362291-22362728                       79   5e-15
01_05_0324 - 20946774-20946935,20947301-20947780                       77   1e-14
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           77   2e-14
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     66   2e-11

>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +2

Query: 74  KAVIKHADMXAALQQAAVDCATQALEXFNIE--KDIAAFIKKEFDKKYNPTWHCIVGRNF 247
           KA+++  DM   +Q  A+  A +AL+ F++   + IAA IKKEFD  + P W C+VG +F
Sbjct: 5   KAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVVGASF 64

Query: 248 GSYVTHETRHFIYFYLGQVAILLFK 322
           G Y TH    FIYF LG +  L+FK
Sbjct: 65  GCYFTHSKGSFIYFKLGALRFLVFK 89


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
 Frame = +2

Query: 83  IKHADMXAALQQAAVDCATQALEXFNI--EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 256
           ++ ADM  A+Q+ AV  A  A+        K +A  +KKEFD  Y P WHCIVG  FGSY
Sbjct: 108 VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYGPAWHCIVGTGFGSY 167

Query: 257 VTHETRHFIYFYLGQVAILLFKS 325
           VTH    F+YF + +V +LLF++
Sbjct: 168 VTHSVGGFLYFSVDKVYVLLFRT 190


>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
 Frame = +2

Query: 92  ADMXAALQQAAVDCATQA---LEXFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVT 262
           ADM   +Q  A  CA ++   L+ F+  + +A  +KKEFDK Y PTWHCIVG ++GS+VT
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVT 183

Query: 263 HETRHFIYFYLGQVAILLFKS 325
           H    F+YF + ++ ++LFK+
Sbjct: 184 HARGCFLYFSMDKIIVMLFKT 204


>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/64 (54%), Positives = 41/64 (64%)
 Frame = +2

Query: 56  AKLCXRKAVIKHADMXAALQQAAVDCATQALEXFNIEKDIAAFIKKEFDKKYNPTWHCIV 235
           A     K  +K ADM   ++Q A D A  A E   +EKDIA +IKKEFDK + PTWHCIV
Sbjct: 40  AAAAGHKIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIV 99

Query: 236 GRNF 247
           GRNF
Sbjct: 100 GRNF 103


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 32/64 (50%), Positives = 39/64 (60%)
 Frame = +2

Query: 62  LCXRKAVIKHADMXAALQQAAVDCATQALEXFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 241
           L   K  IK A+M   ++Q A D    A E   +EKDI  +IK EFDK + PTWHCIVG 
Sbjct: 54  LAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGH 112

Query: 242 NFGS 253
           NFG+
Sbjct: 113 NFGT 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,935
Number of Sequences: 37544
Number of extensions: 300100
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)