Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C22
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    56   6e-09
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    29   0.84 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.5  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    26   5.9  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    26   5.9  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   7.9  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   7.9  

>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = +2

Query: 62  ADHGVLIHAGXCIILFSDNVSVEFYGNDTPEFKG--IKEGRMYLTTHRMIYNSKKNTDAM 235
           ++  +L+    C+    D V++       P  K     +G + LT  R++Y +K      
Sbjct: 12  SESDILLLENECMFDCFDGVAISILCKP-PSLKSWTCTKGLLCLTNQRLVYIAKDTDCDF 70

Query: 236 RSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQA 409
           + F  P   L+D  + QP F AN   G V   PNG    E + KL F  GG   + +A
Sbjct: 71  KDFQSPVANLKDTKLNQPFFGANYYSGTVMPVPNGGIPCEAEVKLQFNEGGIFNFVEA 128


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 47  LNIAHADHGVLIHAGXCII--LFSDNVSVEFYGNDT 148
           LNIA +D G  I A    +  L S N  +EFYG+DT
Sbjct: 114 LNIAESDTGSSIEAQDSWVYQLNSFNKKIEFYGDDT 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 551 PPYSAFPD--QPPP--NSVFVSNTPPPYPGVTGASYP 649
           PP SA     QPPP  +S  VSN P P P + G S P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 551 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 649
           P  +  P  PP   +     PPP PGV GA  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 149 PEFK-GIKEGRMYLTTHRMIYNSKKNTDAMRSFSFP 253
           PEF+ G+ EGR   +    +Y  +K  + ++SF+ P
Sbjct: 271 PEFQLGVWEGRNMYSFFAFMYVDEKEWEKLKSFNVP 306


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = -1

Query: 587 LVEVGLEKQNKVAPIHNIL--VEEVHMLVVVRLATVQS-----VGYKEVAKHQLPYDEKQ 429
           L E+ +E   ++AP  NI+  + +   L    L T +      + Y ++  +  PYD ++
Sbjct: 178 LRELDIELMRRLAPRVNIIPAIAKADSLTAQELQTTKEMINADIEYYKIPVYDFPYDIEE 237

Query: 428 DEQLL 414
           DE+ +
Sbjct: 238 DEEAI 242


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 551 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASY 646
           PPY + P +P P +V  S++  P       +Y
Sbjct: 356 PPYPSAPTRPTPPTVQTSSSAAPVDSAEPVAY 387


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 497 LATVQSVGYKEVAKHQLPYDEKQDEQLLT 411
           LAT +  G KE+    LP  E  DE++ T
Sbjct: 412 LATAEKHGLKELENGTLPVTESVDEEVST 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,716
Number of Sequences: 5004
Number of extensions: 53247
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)