Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_C22
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 548 VPPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYPT 652
           +PP +  P  P PN   +S   PP P + G S PT
Sbjct: 409 LPPSAGAPMPPIPNMSNMSGM-PPLPNMPG-SMPT 441


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 149 PEFKGIKEGRMYLTTHRMIY------NSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCI 310
           PE +   +G +YLT  ++I+      ++ +N D +++       + +V V  P F A  +
Sbjct: 357 PEIRVFNDGSLYLTKVQLIHAGNYTCHAVRNQDVVQTHVLTIHTIPEVKV-TPRFQAKRL 415

Query: 311 K 313
           K
Sbjct: 416 K 416


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 111 LTMCQLNSMGMIHQSLRGSRRDGCTSLLIE*FTIQR 218
           + + Q + MG  +++L   RR+G  S+L   F +QR
Sbjct: 207 MALSQFDLMGSPYRNLTFVRREGEFSVLQVSFNLQR 242


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 334 RLGTNFTFYTVGREHRLFHSYILQCNKRKTE*SHGICI 221
           R  T++T Y      + FH       +R+ E +H +C+
Sbjct: 10  RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 47


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 686 PQTHHPQKTQGRSGKMLQSRQGRE 615
           P+THHP +   R  + +     RE
Sbjct: 78  PETHHPIRHGRRQSRSMDLNAHRE 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,939
Number of Sequences: 438
Number of extensions: 3762
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)